LOCUS RID69846.1 858 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-2052
PROTEIN_ID RID69846.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C01916"
/db_xref="Phytozome:Brara.C01916"
intron_pos 282:0 (1/14)
intron_pos 379:0 (2/14)
intron_pos 425:2 (3/14)
intron_pos 461:0 (4/14)
intron_pos 492:0 (5/14)
intron_pos 522:0 (6/14)
intron_pos 560:0 (7/14)
intron_pos 596:0 (8/14)
intron_pos 620:2 (9/14)
intron_pos 639:0 (10/14)
intron_pos 699:2 (11/14)
intron_pos 743:0 (12/14)
intron_pos 777:1 (13/14)
intron_pos 810:0 (14/14)
BEGIN
1 MANVSVAAEW QLLYNRYYRK PEIYQMRWKH VDLSRNKVAC ASFGGPIAVI RDDSKIVQLY
61 AESALRKLRI FNSAGVLLSE TVWKHPGGRL IGMSWSDDQT LISIVQDGTI YRYNIHAELI
121 QPNVTMGKEC FEQNVVECVF WGNGVVCLTE GGQLFCISDF KTMKPYKLAD VPGLTEDDML
181 QPTCLAVREP QYTMSGNVEV LVAVGDEIYV VDEDEAQSIR FDEPNVEDSE MQNDDYGNLI
241 GPVQKMIVSP NGKFLTLFTH DGRIVVVGME SKQIAIDYSC ESALPPQQMA WCGMDSVLLY
301 WDEDLMMVGP LGDPVHYFYD EPVILIPECD GVRILSNTSL EFLQRVPDST ESIFKIGSTS
361 PAALLYDALD HFDRRSAKAD ENLRLIRSSL SEAVESCIDA AGHEFDVNRQ RALLRAASYG
421 QAFSSNFQRD RVQETCRTLR VLNAVRDPDI AIPLSIQQYK LLTPVVLISR LINAHSHFLA
481 LRISEYLGMN KEVVIMHWAC AKITASASTP DAHLLEILLD KLQLCRGISY AAVATHADNC
541 GRRKLAAMLV EHEPRSTKQV PLLLSIGEED TALVKATESG DTDLVYLVIF HIWQKRPPLE
601 FFAMIQGRVL ARDLFVAYAR CHKQEFLKDF FLSTGQIHEV AFLLWKESWD MGKNPMASKG
661 SPLHGPRIKL IEKASNLFSQ TKEHTFESKA AEEHAKLLRI QHELEASTKQ AIFVDSSIND
721 TIRTCIVLRN NRAAAKVKSE FKVSDKRWYW LKTFALATIK DWEALEKFSK EKRPPTGFRP
781 FVEACIDADE KAEALKYIPK LSDLVERGEA YARIGMAKEA ADAAAQANDG GELLERFRKT
841 FSQNAIFDTL KMPFQGVS
//