LOCUS RID69730.1 1030 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-1936
PROTEIN_ID RID69730.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C01807"
/db_xref="Phytozome:Brara.C01807"
intron_pos 95:0 (1/14)
intron_pos 143:2 (2/14)
intron_pos 177:0 (3/14)
intron_pos 246:0 (4/14)
intron_pos 278:0 (5/14)
intron_pos 370:0 (6/14)
intron_pos 438:0 (7/14)
intron_pos 491:0 (8/14)
intron_pos 522:0 (9/14)
intron_pos 593:2 (10/14)
intron_pos 647:0 (11/14)
intron_pos 802:2 (12/14)
intron_pos 865:0 (13/14)
intron_pos 988:0 (14/14)
BEGIN
1 MHLASLSPLS TLRFLLPLSP KLFPLPSLFR ISAMGPNSQG GRRGGGFSSN RGGGRRGGRG
61 GGGGGGRGGG GGRGEQRWWD PVWRAERLRQ QQAEMEVFDE NEWWNKIEQM KTGGEQEMVI
121 KRNFSRGDQQ TLGDMAYQMG LYFHAYNKGK ALVVSKVPLP DYRADLDDRH GSTQKEIQMS
181 SETERKLGSL LKTTQQVGST SGSNDQQNRT SAIGVKKSDS ASKFSDSHEK EKFSVALKDR
241 QDKLKATESV KALHAFREKL PAFKMKQDFL TSVSENQVLV VSGETGCGKT TQLPQFILEE
301 EISSLRGADC NIICTQPRRI SAISVASRIS AERGEPIGES VGYQIRLESK RSDQTRLLFC
361 TTGVLLRRLI EDPNLSGVSH LLVDEIHERG MNEDFLLIIL RDLLPRRPDL RLVLMSATIN
421 ADMFSTYFGN APTMHIPGFT FPVTELFLED VLEKSRYTIK PSDSGNYQGG SRGRRRDSES
481 KKDDLTTLFE DIDINVHYKS YSPATRLSLE AWSGAQIDLE LVEATIEHIC RREGDGAILV
541 FLTGWDEISK LLENIKGNRL LGDSSKFLVL PLHGSMPTVN QREIFDRPPP NKRKIVLATN
601 IAESSITIDD VVYVVDCGKA KETSYDALNK VACLLPSWIS KASAHQRRGR AGRVQAGVCY
661 RLYPKVIYDA FPQYQLPEII RTPLQELCLH IKSLQVGSIG SFLAKALQPP DALAVENAIE
721 LLKTIGALDD TEELTPLGRH LCTLPVDPNI GKMLLIGAIF QCVNPALTIA SALAYRSPFV
781 LPLNRKEEAD EAKRYFAGDS CSDHIALVKA FEGYRDAKRG GHERDFCWEN FLSPLTLKMM
841 EDMRNQFLDL LSDIGFVDKS RGPNVYNQYS QDMEMVSAVL CAGLYPNVVQ CKRRGKRTAF
901 YTKELGKVDI HPGSVNARVN LFSLPYLVYS EKVKTTSVYI RDSTNISDYA LLMFGGSLMP
961 SQTGEGIEML GGYLHFSASK NVLELIQRLR GEVDKLLNRK IEDPSLDITV EGKGVVSAVV
1021 ELLRSRSIRY
//