LOCUS RID69684.1 1265 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-1890
PROTEIN_ID RID69684.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C01764"
/db_xref="Phytozome:Brara.C01764"
intron_pos 958:0 (1/7)
intron_pos 978:0 (2/7)
intron_pos 1029:0 (3/7)
intron_pos 1082:2 (4/7)
intron_pos 1132:0 (5/7)
intron_pos 1173:0 (6/7)
intron_pos 1202:1 (7/7)
BEGIN
1 MDKDNMDQAK GYEHVRYTAA PDPRSEGIGS MNQRFSHDSS TNVNMNVRPP DYAIPTPARP
61 VLNYSIQTGE EFAFEFMRDR VIMKPQFVPD VYGKPPSGMP VSVNLSAMGM VLPVSESGSN
121 TTVLSAAEKR HTFEQERKPP ARKEDKSYHE LVKSAPVISS RNDTGQKVQS LVSSRASDSS
181 LNQAKFLCSF GGRIIPRPRD QKLRYVGGET RIIRISKDIS FQELMRKMSE MFPEVRTIKY
241 QLPGEDLDAL VSVSSDEDLQ NMMEECTVFG NGGSEKPRMF LLSSSDIEEG QFGMEAAEGD
301 SEVQYVVAVN GMDLGSRKSS LGITAPGNNL DELLHSNTDR EISRAATEPA VASVAPLAGN
361 ESLSAGQTSQ PVAGFSTGNE PFSQPYLGQQ VHFTGLGNHQ VYTSAHMASI GYIDEKGSAP
421 LHVQPQPHFI PYSVNPETPL EVVAPHYPHK PEQGVLHDEQ IYHVQDSEAS TKEAKMRRDD
481 SFKKVTDPAN VSTVGTSLPA KEPKLRIESS TPRVSEYSVS STSDLKVPDH VLKEEAPVST
541 QVSDSTPNPS TSACPEKSGR KSQDHVENNL SAKEPKMRKE QSTTRASEYS ISSVSSDSMV
601 PNHTLKEEAP VSMQISNSTP NPSSFFYPEG SLKTPQEYVP KTAALDTANE GIKIYQENQF
661 SLPGRISGSG LVTSDGDSSN VSNVDQQVLH KKVFHSERIP RDMAESKRLS KSDDSLGSQF
721 VMAKSTSDAF LPISESAETF HEANMESQNV HSSAPVRPAP ESLWTAEGNI SQFEKRNLEP
781 NAPEHVSQSE ASDKAVPRGH LENGDIVVDI NDRFPRDFLA DILKVKESLS FPGLGPLHGD
841 GAGVSVNVQN LDPKNWSYFR NLAQDEFERK DLSLMDQDHP GFPTSLTNTD GVPIDYSYPP
901 LQSEKIAPTR LKPQIHFDEN IQPHVSTTAV ADSRTADTQE DYGQSQFKGA ETTDANVNTG
961 VPLIDLVAED SSHRSLQVIK NDDLEELKEL GSGTFGTVYH GKWRGTDVAI KRIKRSCFIG
1021 RSSEQERLTS EFWHEAEILS KLHHPNVMAF YGVVRDGPGG TLATVTEYMV NGSLRHVLLS
1081 NRQIDRRKRL IIAMDAAFGM EYLHSKNIVH FDLKCDNLLV NLKDPARPIC KVGDFGLSKI
1141 KRNTLVTGGV RGTLPWMAPE LLSGSSSKVS EKVDVFSFGI VLWEILTGEE PYANMHYGAI
1201 IGGIVNNTLR PTVPSYCDPE WRMLMEQCWA PDPFVRPSFP EIARRLRTMS TSAAKAHAAN
1261 HQVHK
//