LOCUS RID69670.1 1695 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-1876
PROTEIN_ID RID69670.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C01751"
/db_xref="Phytozome:Brara.C01751"
intron_pos 262:0 (1/36)
intron_pos 286:0 (2/36)
intron_pos 308:0 (3/36)
intron_pos 332:0 (4/36)
intron_pos 354:0 (5/36)
intron_pos 375:0 (6/36)
intron_pos 397:0 (7/36)
intron_pos 430:1 (8/36)
intron_pos 464:1 (9/36)
intron_pos 539:0 (10/36)
intron_pos 577:1 (11/36)
intron_pos 617:2 (12/36)
intron_pos 676:1 (13/36)
intron_pos 721:2 (14/36)
intron_pos 755:1 (15/36)
intron_pos 771:1 (16/36)
intron_pos 833:0 (17/36)
intron_pos 872:1 (18/36)
intron_pos 915:0 (19/36)
intron_pos 972:1 (20/36)
intron_pos 1012:0 (21/36)
intron_pos 1068:1 (22/36)
intron_pos 1096:2 (23/36)
intron_pos 1121:1 (24/36)
intron_pos 1161:1 (25/36)
intron_pos 1226:2 (26/36)
intron_pos 1267:1 (27/36)
intron_pos 1335:2 (28/36)
intron_pos 1360:1 (29/36)
intron_pos 1406:2 (30/36)
intron_pos 1467:1 (31/36)
intron_pos 1519:1 (32/36)
intron_pos 1563:1 (33/36)
intron_pos 1583:0 (34/36)
intron_pos 1594:0 (35/36)
intron_pos 1638:0 (36/36)
BEGIN
1 MEEVASKAEE EAIETTVEAT KEGNAAAADG SRSPESVSAA SLVSSRAATT RKKAVISSNL
61 IKPTASSSLR VSSSTPVTIR RNSTGGVTEK LTGATKALPK RTSTTTASAT DPVRRSLPEL
121 KRSSLSAKTV SRPSLPESKK PIPVSPGGRS STKSGLSKPE SSSARSAMSV SVSSKRAPSS
181 SVDSSGRAHS TLSSGRTVSK ASSPSAGSSP SVSSGMRSKS LSTPLDRSSN VSGRKKTATL
241 ESRDSRLIIL PKVEVKAGDD MRLDLRGHRI RSLTSGGLHL SPNLEFVYLR DNLLSELEGI
301 EILNRVKVLD LSFNDFKGPG FEPLENCKML QQLYLAGNQI TSLASLPQLP NLEFLSVAQN
361 KLKSLAMASQ PRLQVLAASK NKITTLKDFP YLPVLEHLRV EENPLLKIPH LEAASILLVG
421 PSLKKFNDRD LAREEVAIAK RYPPHTALCL RDGWEFCKSE LAAESTFRFL VEKWQDTLPS
481 GCIIKEASVD RPSEESPCQS HFGLVQESAD SELVLRYQWS VADRSLSNFV PIPDATNEVY
541 WPKHEDIGKI LKIECTPVIG ETEYPSIFAI SSPVLRGKGI PKVVSLELHG ELVEGNILKG
601 QAVVAWCGGT PGKCITSWLR RKWNGSPVVI DGAEDDEYRL SLDDVGSSMV FMYTPVTEEN
661 ARGEPQYKYT EFVKAAPPSV SNVRIVGDAV EGCVLKGIGD YFGGKEGPSK FQWLRKNKET
721 GEFSLISVGT SEYTLTQEDV GRHVTFVYIP ANFEGLEGEP LSTLSSVVKP APPKVKDVKI
781 VGDLRENSKL TVTGTVTGGT EGSSRVQWFK SSCSVLEGGN NLEELSTSKV AKSFRIPLGA
841 VGYYIVAKYT PMAPDGECGE SVYVISERAV ETLPPSLNFL SITGDNIEGG ILTASYGYIG
901 GHEGKSIYEW HYHKAESDHP GTLIPGASGL LQYTITKEAI GKFISFQCIP VRDDGIVGEA
961 RTCMCQERVR PGNPRAVSLQ VVGAAVEGTM LSAEKEYWGG EEGASVFRWF RTNSDGTPCE
1021 IKGATTSSYL LSVDDIGFFI SVSYEPVRDD WARGPTVISD ITGPIVAGHP TCQSLEFLGS
1081 MIEGQRLSFV ASYTGGVKGN CSLEWFRVKR NGVKELLSND EFLDLSLEDV GESIEIIYTP
1141 VREDGIEGNP RSIRSDSISP ANPMGLELLI PDCHENQEVV PHKTYFGGHE GDGEYIWYRT
1201 KEKLHGSALT EISYAGEEVI ACSRTLKYTP SLEDVGAYLV LYWIPTRVDG RSGKPVVSIT
1261 NSPVTPADPE VFNVRVEKLF SDAYSGEGEY FGGHEGESLF SWYRDNDGTI DVIAGANSKT
1321 YEVTESDYNC RILFGYTPVR SDSVVGKQKM SEPTEIILPE VPRVEMLAFS GKAVQGDVLT
1381 AVQVIPKTEI QQLVWSKYKG AIEYQWFRSL ESGDEMSYEA LSSEISCSYK VRFEDIGRCL
1441 KCECVVHDVF GRSSEPAYAE TGPISPGFPR IEKLEIEGGG FHTNLYALRG NYFGGKEGKS
1501 KIQWLRSMVG SPDLISIPGE TGRMYEANVD DVGYRLVVVY TPIREDGVEG HPVSASTEPV
1561 AVEPDLYKEV KLKLETGLVK FEVLCDKDPY PKKIVGDGNL ERRMLEMNKK RIKVVKPGSK
1621 TSFSSTEVRG SYVPPFHVET FRNDQRRLRV VVDSENAVDM VVHSRHLRDV IVLVIRGFAQ
1681 KFNSTSLNSL LKIDA
//