LOCUS RID69562.1 921 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-1768
PROTEIN_ID RID69562.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C01650"
/db_xref="Phytozome:Brara.C01650"
intron_pos 88:1 (1/5)
intron_pos 530:0 (2/5)
intron_pos 621:2 (3/5)
intron_pos 632:1 (4/5)
intron_pos 769:0 (5/5)
BEGIN
1 MGLSIDPSVP IMALIVAILV VPVGCQRPKV VNLGAVFTFD SVIGRAAKVA LEEAVSDVNA
61 DRSVLKETEL RLFMEESSCN VFHGSFGAFK VLEKEVVAMI GPLSSSIAHT LSDIAKGLQF
121 PLVSFAATDP TLSALQFPFF LRTTPDDAHQ MSALVDFITF HGWKEVISVY SDDELGRNGV
181 SALDDELYKK RSRISHKVPL SVHSDEGSVT DALKKSKSLG PRVYVLHFGP DPLLRIFRIA
241 QKLQMMTREY VWIATDWLSV TLDSSLSDNG TLKRLEGVVG LRQHIPQSVK MHQLTHKLKS
301 NGSMNAYALH AYDTVWMIAY GIEKMLNEGI NITFSYSENL IHAEGTKLHL ERVKIFNSGR
361 VLLEKLLQVN FTGIAGHVRF GSGRNVIGCD YEIINVGKTG VNTVGFWSRN GGFSVVPPDS
421 RHTHKKTGFV SDEKLGNITW PGGGREKPRG WVIADSASPL KIVVPNRVSF VEFVTEENNS
481 SHQIKGLCID IFKEALKFVP YSVPYIFESF GDGHSSPNYK HIIQMVTDGV YDAAVGDFAI
541 VPTRSKLVDF SQPYASTGLV VVIPTNDDNP TWIFLRPFTI RLWCVVLASF LIIAVVIWIL
601 EHRINEDFRG PPRKQLITMI LFSFSTLFKR NQEDTISNQA RLVMIVWLFL LMVLTASYTA
661 NLTSILTVLQ LPSAITGIDS LRASEVPIGY QAGTFTLEYL TYSLGMARSR LVPLDSTEEY
721 ERALKLGPTA FGGVAAIVDE LPYIELFLAE RTGFKIVGDP FMHRGWGFAF KRDSPLAIDM
781 SRAILKLSET RKLQDIRKKW LCKKTCAEKS DGNPEPNQLH LKSFKGLYLV CIAISVSALL
841 VFVFRMVRQF VRYRRMERTS SMPLASWSSS PTMRLKELVF GFVEFVDEKE EAIKRMFRRS
901 NDSDNPSHVV EVQADPEVRQ N
//