LOCUS RID69561.1 939 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-1767
PROTEIN_ID RID69561.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C01649"
/db_xref="Phytozome:Brara.C01649"
intron_pos 100:1 (1/5)
intron_pos 550:0 (2/5)
intron_pos 642:2 (3/5)
intron_pos 653:1 (4/5)
intron_pos 790:0 (5/5)
BEGIN
1 MISGVTMGLM FLCVSGFWVL LTEGAGRESF LRNSSFSSRP SSVNVGALFT YDSFIGRAAK
61 PAFMVAIEDV NADQNILRGT KLNIVFHDSN CSGFVGTMGA LQVMENKVVA AIGPQSSGIG
121 HLISHVANEL HVPLLSFAAT DPTLSSLQYP YFLRTTQNDY FQMNAIADFV SYCRWREVVA
181 IFVDDEYGRN GISVLGDALA KKRAKISYKA AFRPGADNSS LRDLLVSVNL MESRIFVVHV
241 NPDSGLNVFS VAKSLGMMES GYVWIATDWL LTALDSRLDP NTMDLLQGVV AFRHYTPESN
301 EKRRFKARWK SLRTKETSGG GDDGFNSYAM YAYDTVWLVA RALDVFFSQG NTVTFSTDPN
361 LRKTNGTNIK FSALSVFNEG ERFLQVIHEM YYTGLTGQIR FDSEKTRINP AYDVVNINSR
421 GPQRVGYWSN HTGFSVEPPE TFYSKPPNTS VEHQRLNEII WPGGVTKPPR GWVFTDNGEP
481 LKIGVPNRVS YKNYASEEKN QLGVKGYCID IFEAAVELLP YPVPRTYILY GDGKRNPSYD
541 NLVNEVASNN FDVAVGDITI VTNRTKFVDF TQPFMESGLV VVAPVKGAKT SPWSFLKPFT
601 VEMWAVTGLL FLFVGAIIWI LEHRFNEEFR GPPRRQIITV FWFSFSTMFF SHRENTVSTL
661 GRFVLLIWLF VVLIINSSYT ASLTSILTVQ QLTSRIEGMD SLITSSEPIG VQDGTFAYKY
721 LVNELNIAPS RIIPLKNEQD YLSALQLGPR GGGVAAIVDE LPYIKALLSN SNCEFRTVGQ
781 EFTRTGWGFA FQRDSPLAVD MSTAILQLSE EGKLEKIRKK WLTYSHECSV QIADTENYQL
841 SVQSFWGLFL ICGIVWFIAL TLFCWKVFWQ CQGLRPEEES DELRVSEEAS SSRSGRSLRA
901 GSFKDLIKVV DKREVEIKEM LKQKSSKKLK ASQSSAETP
//