LOCUS RID69546.1 1316 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-1752
PROTEIN_ID RID69546.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C01634"
/db_xref="Phytozome:Brara.C01634"
intron_pos 42:0 (1/26)
intron_pos 71:0 (2/26)
intron_pos 127:0 (3/26)
intron_pos 185:2 (4/26)
intron_pos 224:0 (5/26)
intron_pos 300:1 (6/26)
intron_pos 360:0 (7/26)
intron_pos 417:0 (8/26)
intron_pos 452:0 (9/26)
intron_pos 488:0 (10/26)
intron_pos 558:2 (11/26)
intron_pos 589:2 (12/26)
intron_pos 632:1 (13/26)
intron_pos 670:2 (14/26)
intron_pos 714:0 (15/26)
intron_pos 784:0 (16/26)
intron_pos 853:2 (17/26)
intron_pos 921:0 (18/26)
intron_pos 977:2 (19/26)
intron_pos 1086:0 (20/26)
intron_pos 1128:0 (21/26)
intron_pos 1145:2 (22/26)
intron_pos 1196:0 (23/26)
intron_pos 1217:0 (24/26)
intron_pos 1261:2 (25/26)
intron_pos 1304:2 (26/26)
BEGIN
1 MSTVDKMLIK GIRSFDPENK NVITFFRPLT LIVGSNGAGK TTIIECLKVS CTGELPPNAR
61 SGHSFIHDPK VAGETETKAQ IKLRFKTAAG KDVVCIRSFQ LTQKASKMEY KAIESVLQTI
121 NPHTGEKVCL SYRCADMDRE IPALMGVSKA ILENVIFVHQ DESNWPLQDP STLKKKFDDI
181 FSATRYTKAL EVIKKLHKDQ AQEIKTYKLK LENLQTLKDA AYKLRESIAQ DQERTESSKA
241 QMSELESSIQ KVDAEVHNKE MMLKDLRKLQ DQVSRKTAER STLFKEQQRQ YAALPEENED
301 TMEELKEWKS KFEERIALLE TKIRKMEREL DDTATTISSL HNAKTNYMLE ISKLQTEAEA
361 HMLLKNERDA SIQNIFSNHN LGNVPSTPFS TDVVLNLTNR IKSRLGEFEM DLLDKKKSNE
421 TALSTAWDCY MDASDRWKSI EAQKRAKDDI KTGISKRIEE KEIERDSFEF EISNVDVKQI
481 DERENLVQVE LERKSKQNSE SGFESKIEQK QHEIYSMEHK IKTLNRERDV MAGDAEDRVK
541 LSLKKTELEN LKKKHKKIID ESKDKIRGVL KGRLPLEKDM KKEIVQALRS VEREYDDLSL
601 KSREAEKEVN MLQMKIQEVN NSLSKHHKDT ESRKRYIESK LQALKQESFT IDAYPRLLDS
661 AKDKRDYHKS KYNMATGLRQ MFEPFEQVAR EHHFCPCCER TFSAQEEDNF VKKQRAKAST
721 TGDHVKALAA ESSNADSIFQ QLDKLRSVFE EYTKLTDEII PLAEKSLQEF TEELEQKSEA
781 LDDVLAISAQ IKSEKESVEA LVQPLENADR LFQEIVSNQK QIEDLEYKLD FRGHGVKTMQ
841 EIQSELSSLQ STKDKLHDEL EKLRDEQIYM ERDISCLQAR WHALREEKAK AANLLRDVTK
901 TEEDLERLAE EKSQLDLDVK HLTEAVGPLA KEKEQLLSVY NDIKVKRNQE YEELAEKKRN
961 YQQEVEALLK ANSKINEYND LKKGERLNDI QEKQRAAESQ LQSSESRRNE IVAELSKSKD
1021 LMRNQDQLRR NIEDNLNYRT TKAAVEVLTR EIESLEEQIL NFGGIPAVEA EIVKILRERE
1081 RLLSELNRCR GTVSVYQSSI SKNKVELKQT QYKDIDKRHF DQLIQLKTTE MANKDLDRYY
1141 NALDKALMRF HTMKMEEINK IIRELWQQTY RGQDIDYIRI HSDSEGAGTR SYSYKVLMQT
1201 GDTELEMRGR CSAGQKVLAS LIIRLALAET FCLNCGILAL DEPTTNLDGP NSESLAGALL
1261 RIMEDRKGQE NFQLIVITHD ERFAQMIGQR QHAEKYYRIA KDDMQHSIIE TQEIFD
//