LOCUS RID69291.1 1065 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-1497
PROTEIN_ID RID69291.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C01391"
/db_xref="Phytozome:Brara.C01391"
intron_pos 148:1 (1/4)
intron_pos 413:2 (2/4)
intron_pos 845:0 (3/4)
intron_pos 874:0 (4/4)
BEGIN
1 MPRSTRHKSS KHKDARDHSD SEKEEKKSSS SAVRVSGEKR GKEYYDNGEY YEEYTSSSSK
61 RRRGKGGESG KEDEKGESSK KSKVSSSRRR EEGDGEEVRK SSSGKHRESS RREVDKDKDN
121 KKYKESKSDK LYDGDDHHRS KCLSDKTESK AEDQQKSLGT ENHTEKRSRR KRDDHGVGDK
181 NQDNSDDEYV KDGKHRGEKS RDKYLEDKEE DVKQIGEKQR EDRPTKEHHR SDGKLLPEES
241 KRKSKVQDAD HGHEPDSELD GYHERERDRE RGRDRDRDYE RDRERDRDRE RDRDRRDYEH
301 DRYYGRDWDR DRSRDRDRDH DRDRTHEREK DRSSRDYYHE GKQSKSDRER DNDRDASRLD
361 DQSGRYRERR EGRKSPDYQE VVTDTRSSRA GPDGDVIKSE RQPSSSVVQE ENGNVSDQTT
421 KWVSSREAAE LSGGSDRGTR QKASEKTPKT EDGVLGEFHG SAKASPRPMV ERSPSSTSLD
481 RRFNNNQNSA RWSNEAEETG HRNNARDFSA PEDERLRADD TSQGDISFNN KANQNNSSFP
541 PRPESRSGMS SPRVGLREDD NRANTGGRYR RGVDGMIGRG QTQSNNAWRG VPSWPAPLPN
601 GFIPFQHVQP HGFQAMMPQY PSPSIFGVRP SMEMNHSGIP YHIPDAERFS GHMRPLGWQN
661 MMDNSGASSH MHGYFGDMSN SAFRDESNMY GGSEWDHNRR MQSRGWESGG DEWKNRNGDA
721 SMEVSSRSAK DDNSAQVADG ESPGGQTSHS ENNRGKSVEA GSNLTSPAKD LDARSPKIKV
781 EAAAEDPVAE TTDKRSERFC RHYLSKLDMS VELADPELRK CISVLMGEEH QPIDDVAAVF
841 VNLKEGGKRV PKGNSTSLAT LSLVPSQNSS LFQIAMELYK EQRFEMKGLL NVETHRPPQA
901 SPSSLAKVDV SDSDTSQKEH QIESLPVDAG LEMGTQVERS PSPIPDKSPE AVASDHIEGC
961 EEDGKPDDGA AVDQTMDTAP EHDAVTEGDP VTLTVASPEA LEAMEVEEGK VLCEDEEMEE
1021 AEEEKEVEAV DGNGDVSPKV KESLVNETDE SVISQIHDAT TQSTH
//