LOCUS RID69105.1 1084 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-1311
PROTEIN_ID RID69105.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C01221"
/db_xref="Phytozome:Brara.C01221"
intron_pos 297:0 (1/3)
intron_pos 467:2 (2/3)
intron_pos 928:1 (3/3)
BEGIN
1 ATYSLLSSFI KNVPEVFSEG DVRCLAPALL GVFRENNPIC HSSMWEAVLL FFRKFPQSWG
61 NLNVHKSVLN HLWQFLRNGC FGSPQVSYPA LILFLEVMPT QSVQADKFFV NFFNNLLAGR
121 SMCDSSSADQ LSLLRATTEC FLWGLRNASR YCDGPSSTHD LQVDLIDKVL VKHLWANFFE
181 LSKDSTPHIQ RKPSETLSMS SSVNFLQELG RCILDILSGI NLLEQNLLSY FLKSVQESFL
241 NMLQQGDTET VTGSMRKMID FLLLLERYSG LEGESWPLDQ FMGPLLSKAF PWIKSSELID
301 GLKLLSVSVS IFGPRKIVPV LVGDIETYTL LSVGEGRDMS PEKFIKVFQE MFIPWCVDGY
361 DSSTAVRAAK QDLLLSLLDD ECFSQQWSDV ISYVFDQQHH GFDKLASMEL LLEKARDQIT
421 ERSSGLELSQ RIGSKPDHWH HELIESTAIS LVRSSPVTTT SAAQFLCSVL GGATEDSSIS
481 FVSRSSLVLI YRGILEKLLS FIKQSPYCSV SDTCSSLIVE AVDIEFDLSS SVDVIAITKF
541 AAEVIDGSLF SLKSLNQDAT LLSTIFSSVF IIDLESRISS VVDSTLNEFK EKQKDRNIVC
601 GFVHAVCSKM NNHFWKSINY DVRKSSAKIL AQSVRSVVQL EDDLQPCQLT LLCASWMPEV
661 LESLSLDQTD EEDICGLLLR ESDVWPMWIS PSSLTIINTH DVPAHVCDLR TSKSQRYVSF
721 IDSLITKMGI HRFVVGHKDN GLSPQAWLSA EILCTWEWPG GSVQTSFLPA LVSYCKSEPA
781 KADLLNFIFE ILLNGALVHG EDEEDERESS EHMWVELNNH IEDVQEPFLR ALVSLTSTLF
841 KENIWREEEA MAAFKMVTDK LFIGEETSKN CLRTIPFIMS IIISPLRTTT KSDVSGEDTG
901 LPLEVILRGW LERSLSFPPL VLWQSGEDME DWYQLVISCY PVSEMAEEDK APQMHVSNEE
961 RTLLLDLFRK QRQVPRASSV VTQLPAVQIL LARLIAVAVS YCGNDFNEED WDFVFSNLRR
1021 LIQSAVVVME ETSENVNDFI SGVSSMDKEI DTLEGLGHIV SISDPSLDNA KNALSAFSLL
1081 NALV
//