LOCUS RID69076.1 946 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-1282
PROTEIN_ID RID69076.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C01197"
/db_xref="Phytozome:Brara.C01197"
intron_pos 20:2 (1/20)
intron_pos 54:0 (2/20)
intron_pos 77:0 (3/20)
intron_pos 156:0 (4/20)
intron_pos 215:1 (5/20)
intron_pos 259:2 (6/20)
intron_pos 314:0 (7/20)
intron_pos 363:1 (8/20)
intron_pos 399:0 (9/20)
intron_pos 451:0 (10/20)
intron_pos 474:0 (11/20)
intron_pos 497:0 (12/20)
intron_pos 543:0 (13/20)
intron_pos 586:0 (14/20)
intron_pos 635:1 (15/20)
intron_pos 680:0 (16/20)
intron_pos 722:0 (17/20)
intron_pos 743:0 (18/20)
intron_pos 858:1 (19/20)
intron_pos 910:0 (20/20)
BEGIN
1 MATFSMRDLD EALQGCGQKS GIEIWRIENF KPVAVPNESH GKFFSGDSYI VLKTTASKSG
61 SLHHDIHYWL GKDSSQDEHG SVAVMTVELD SALGGRAVQY REVQGHETEK FLSYFKPCII
121 PQEGGVASGF NHVKPEEHQT RLYICKGKHV VRVKEVPFVR STLNHDDVFI LDTESKIFQF
181 SGSNSSIQER AKALEVVQYI KDTYHDGKCE IAAVDDGRMM ADAEAGEFWE LFGGFAPLPK
241 KSAVSDDQTA ESDGIKLFSV EKGQTEAVEA ETLEKELLDT NKCYILDCGL EVFVWKGRNT
301 SIDQRKSASE AAEGFFRSSE RPKSNLISVM EGFETVMFRS KFDSWPTTST VAEPRQGRGK
361 VAALLQKQGV NVEGLVKTSS PSSKDEPKPY IDGTGNLQVW RINNEEKILL EGAEQSKFYS
421 GDCYILQYSY PGDDREEYLV GTWLGKQSVE EDRATAISMA SKMVESMKFM PAQARIYEGK
481 EPIQFFVIMQ SFITFKGGLS DAFKKYIAEN EVPDNTYNAE GVALFRVQGS GPEDMQAIQI
541 DAVSTGLNSS HCYILHGDST VFTWCGNLTT SDDQELMERM LDLIKPDEHT KAQKEGIESE
601 QFWELLGGKS EYPSQKIKKD GESDPHLFSC TFSNEIFNFT QDDLMTEDFF ILDCHTEVYV
661 WVGQQVDPKK KPQVLDIGEK FIKHDFLLEN LASETPIYIV TEGNEPPFFT RFFTWDSTKS
721 AMHGDSFQRK LAVLTNKKQL LNKPKRRVPV YSGRSSVPDK PQPRSRSVTS TTDRSRVRGR
781 SPAFNALAAN FGNVSTRNLS TPPPMVGPMV RKLYPKSHAP DLTKLAPKSA AIAARTAIFE
841 KPKPTPQETP TSPGSSEATN GAETAEDESM SNIKEEEAEE ESNLPTFPYE RLTTESEDPV
901 PDIDLTRREA YLTAADFKEK FEMTKSEFYK LPKWKQNKLK TAVQLF
//