LOCUS RID69064.1 1062 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-1270
PROTEIN_ID RID69064.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C01185"
/db_xref="Phytozome:Brara.C01185"
intron_pos 749:0 (1/7)
intron_pos 783:0 (2/7)
intron_pos 834:0 (3/7)
intron_pos 888:2 (4/7)
intron_pos 938:0 (5/7)
intron_pos 979:0 (6/7)
intron_pos 1008:1 (7/7)
BEGIN
1 MCSSNRVIRF AMDSGSVNSS SVTSPGSSLN DEPHRVKFLC SFLGSILPRP QDGKLRYVGG
61 ETRIVSVTRD VSYEELMSKM RELYEDAAVL KYQQPDEDLD ALVSVVNDDD VVNMMEEYDK
121 LGSGDGFTRL RIFLFSSPEM DGSSGYDDQR ESERRYVDAL NNLVEGTDFR KVQQYPDSPR
181 FNLNNDDFSM VEPFNQLAIE SGGGGSQRGN EIPVAQYNNL HQLRIPRVGS GQMIAARYGD
241 VEGTWSPYYS PRHHGHFQEF PSSPSSARYR MPYGEVLDKG FDRMPEDYAR PGHHPLYEHQ
301 GQVPDNVVWV PAGATPLESK GGFPGNVLHG GPSGYEGGGN ICESCRVPFH KNHQPFDQAN
361 GFQPVPSAHC AQCPPNRETF MLNADPKPPT PHGAYANETF GHERGWIGQQ QVNPNPNPNP
421 PRIDEGRPLL SIVGRPSDHY TLDGPGMNYP FGHRPGPEIS NEGFHDKPLG GIPLNPSNPS
481 AEERGFHYGN NLYAPGPESV HSASHSHIYP QQNIWQNVPN HISGAPGLPM QQVNGTANQT
541 VIRNPMDSAS RYSIGVENQS VLVGSPQNIS GFDAMSSPGQ PYYPNPHFQD RAFPLDPNWV
601 PSENQAVRSE YLQGLKPLTG PMLQTNLDGA PIMQTPDCVE VVRPVESKVA QGGEHINCVD
661 TGVSDGVPCL DKHQPLAEGK NDIVEVSPSA AAPPEGAELS VERLSFLPEL MESVKRAALE
721 GAAEVKAHPE EANDPVRPEL VENESEHVNA QVEHEDSDSD NPNNFKIEPT KAEAEALSRG
781 LQTIKNDDLE EIRELGSGTY GSVYHGKWKG SDVAIKRIKA SCFAGKPSER ERLIEDFWKE
841 ALLLSSLHHP NVVSFYGIVR DGPDGSLATV AEFMVNGSLK QFLQKKDRTI DRRKRLIIAM
901 DTAFGMEYLH GKNIVHFDLK CENLLVNMRD PQRPVCKIGD LGLSKVKQKT LVSGGVRGTL
961 PWMAPELLSG KSNMVSEKID VYSFGIVMWE LLTGEEPYAD MHCASIIGGI VNNTLRPKIP
1021 QWCDPEWKGL MESCWASEPT ERPSFADISQ KLRNMAAAMN LK
//