LOCUS RID69032.1 912 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-1238
PROTEIN_ID RID69032.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C01154"
/db_xref="Phytozome:Brara.C01154"
intron_pos 163:2 (1/20)
intron_pos 224:2 (2/20)
intron_pos 255:1 (3/20)
intron_pos 323:2 (4/20)
intron_pos 398:0 (5/20)
intron_pos 421:2 (6/20)
intron_pos 457:1 (7/20)
intron_pos 474:0 (8/20)
intron_pos 509:0 (9/20)
intron_pos 529:0 (10/20)
intron_pos 559:0 (11/20)
intron_pos 584:2 (12/20)
intron_pos 613:0 (13/20)
intron_pos 640:0 (14/20)
intron_pos 674:2 (15/20)
intron_pos 691:1 (16/20)
intron_pos 727:0 (17/20)
intron_pos 771:0 (18/20)
intron_pos 826:0 (19/20)
intron_pos 873:0 (20/20)
BEGIN
1 MERPRAPPSP LTDLEPLSER RSLEVFNPSS GSSSSSKPYD GNSKISSSSK WMEFQDSAKI
61 TERTAEWGLS AVKPEPGENG ISFKLSTEVE RSKMSRRSSE ESTSSESGAF PRVSQELKTA
121 LSTLQQTFVV SDATQPHCPI VYASSGFFTM TGYTSKEIVG RNCRFLQGPE TDQKEVAKIR
181 DCVKNGKSYC GRILNYKKDG TPFWNLLTIT PIKDDQGNTI KFIGMQVEVS KYTEGVNDKA
241 LRPNGLSKSL IRYDARQKEK ALDSMTEVVQ TIKHRKSQVR DSVSNDVMVK PGSATTTPGR
301 QAIQSDEASK SAKTPERVST PARSRSKSLS SNKRHEDVPS VEPEELMLST EVIEPRDSWD
361 RSEREKDIRQ GIDLATTLER IEKNFVISDP RLPDNPIIFA SDSFLELTEY TREEILGRNC
421 RFLQGPETDQ STVQKIRDAI RDQREITVQL INYTKSGKKF WNLFHLQPMR DQKGELQYFI
481 GVQLDGSDHV EPIRNRLSER TEIQSSKLVK ATATNVNEAV RELPDANMTP EDLWAAHSKP
541 VYPMPHKKES ASWKAIQKIQ AGGETVGLHH FKPVKPLGSG DTGSVHLVEL KGTGELYAMK
601 AMEKTMMLNR NKAHRARIER EIISLLDHPF LPTLYASFQT STHVCLITDF CPGGELFALL
661 DRQPMKFLSE DSARFYAAEV VIGLEYLHCL GIVYRDLKPE NILLKKDGHI VLADFDLSFM
721 TSCTPQLIVP PAPNKRRRSS SSKSRPLPTF VAEPITKSNS FVGTEEYIAP EIITGAGHTS
781 AIDWWALGIL LYEMLYGRTP FRGKNRQKTF ANILHKDLTF PSSIPVSLVG RQLINMLLNR
841 DPRKRLGTKG GANEIKQHAF FRGINWPLIR DMDSPPLDVP LRIIEKDPKA KDIKWEDDGV
901 LVNSMDIDID LF
//