LOCUS RID68951.1 878 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-1157
PROTEIN_ID RID68951.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C01077"
/db_xref="Phytozome:Brara.C01077"
intron_pos 32:1 (1/12)
intron_pos 211:2 (2/12)
intron_pos 370:1 (3/12)
intron_pos 418:2 (4/12)
intron_pos 442:2 (5/12)
intron_pos 466:2 (6/12)
intron_pos 489:2 (7/12)
intron_pos 544:1 (8/12)
intron_pos 621:0 (9/12)
intron_pos 663:1 (10/12)
intron_pos 685:1 (11/12)
intron_pos 747:2 (12/12)
BEGIN
1 MESCCDRVLL VLIATSALII HTIYAQDQDQ EDFINLDCGL PSYERSPYKA STGLWFSSDE
61 KFIQSGNTGR IREIPVGFTK QYETLRYFPN GSRNCYNLSV DKGRKYLIRT VFLYGNYDGL
121 NIKPVFDIYL GPNLWATIDL VTRVNGTQPE ILHIPTSSSL QICLVKTGTT TPVISTLELR
181 PMVSSSSYMT ESGSLKLYNR YYLNNTGYRI RYSSDVYDRI WLRLFMKEWT QISTSLNVNN
241 SNRYVPPQVA LKNAATPTNA SAPLTIEWSS EKADDQYYLY SHFAEIQYLQ TNETREFNMV
301 WNENLYYGPL IPNKLQLTTI RSQSPTTCKG GKCSFQLIRT NRSTLPPLLN AFEIYTVIQF
361 PQSETDESDV AAVKDIEATY GLSRLNWQGD PCVPQQFRWD GLNCSNTDMS TPPRITTLNL
421 SSSGLAGTIA AVVQNLTQLE TLDLSNNNLT GGVPDFLVNM KSLLVINLSR NNLTGSIPQA
481 LQREGLKLFV EGNPRLCLSD SCAKPQKNKK IVPVVASVAS AAIVIVVLVV LFVLKKGKSA
541 ILQGLHLLPR TSTMNATFAE KNSRRFTYSE VIKMTNNFQR VLGKGGFGMV YHGFVNGSEQ
601 VAVKVLSQSS TQGYKEFKAE VDLLLRVHHT HLVSLVGYCY EGDNLALVYE FLSNGDLKQH
661 LSGKGGRSII NWSTRLQIAL EAASGLEYLH IGCTPPMVHR DIKTANILLD ENLKAKLADF
721 GLSRSFQGGG ESHDTAVAGT LGYLDPEYNH SGRLGEKSDV YSFGIVLLEM ITNQPVINQT
781 SNNSHITQCV GFKLNRGDIA EIMDPNLHKD YDFNSAWRAL ELAMSCANPS SSKRPSMSQV
841 INEIKECLVC AKSGIGKNLE LEPQEIMSSD TSMVPMAR
//