LOCUS RID68873.1 1136 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-1078
PROTEIN_ID RID68873.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C01004"
/db_xref="Phytozome:Brara.C01004"
intron_pos 93:2 (1/15)
intron_pos 174:0 (2/15)
intron_pos 262:2 (3/15)
intron_pos 318:2 (4/15)
intron_pos 365:1 (5/15)
intron_pos 538:2 (6/15)
intron_pos 569:1 (7/15)
intron_pos 590:1 (8/15)
intron_pos 620:0 (9/15)
intron_pos 642:0 (10/15)
intron_pos 852:0 (11/15)
intron_pos 874:0 (12/15)
intron_pos 897:2 (13/15)
intron_pos 917:0 (14/15)
intron_pos 1002:1 (15/15)
BEGIN
1 MLASGNNLSR GAVGLSSDTP NLSQVLTLEP IRLGNQSYTR SGELRRVLGV PTREASSEDT
61 SFGMSHPKPS PPVATEELKQ FKESVLDTSR EAGDLAKKLS ESIFKLDKYA ETLSSKKRRR
121 SDISPGERMD AANLEKMRNQ VPRAQDSMAQ RSEERKKMLG LNKRARTPVG DVRGDGRVST
181 LARQQVIERG SDSPPSVPGE TVRIEEKIRR LPVGGEGWET RMKRKRSVAT LGNRVMNPDQ
241 RVMQPKPTVD SKLRSCDTQN FRLKSSTGVS GINRLESSFE PDSPGMGGLP RNELETVSLA
301 RDRSVLAEQR LMAKGNNKRN LQDDGPTNSS TAILKGNVAR APRTATVMGV DSSSKVEPPS
361 GVLQGSSAHA MAQWVGQRPK NSRTRRTNVV PPIIKHAESK FSPQGFATSE FSPRASPRTT
421 GPLSVVDSSS LKMKREPKNA SSPYGFSESE DSGAGDNKTR ERALASGDLF TTPKTGSPLK
481 KNKMQTSHKG GGAWKQGKSE SVSSLTTPGF HPMIVKSENL TLEKPLHNVK IASDKNRSKY
541 GRPPAKKVKD RKPSTRRASN SISTPDITGE SDDDREDIFA AANSARKAAN LACSGKFWKK
601 MDHIFAAINA DDMQNIKDQL NFAEELDESL SEAILDGYNV MGIKLPKAPH RPGEGIVDYS
661 GPALSCISDL SFERLDMRKL NESTPLYKRV LSALIEEDDG EEVVQFTGGK NLSLHYASDD
721 SHSGSCTYID TEFRERDRME FEVESSGDFQ TPKSCLFDRF SNERSVVYNP FRNGSMSTSV
781 HSNEQWIGDD YVSHSDAALG GEAYSNSLGQ LQARDVNIPN FPVSDTQYQL MSLDERLLLE
841 LQCIGVFPET MPDLAEETMS TDVMELKEGI YQQIRNKKKK LENLNITIQK GKDDEKRKIE
901 QLAMDQLVET AHKKRMASRG NKAFKAHKVT RQAASAFIRR TLARCRKFEE TGLSCFADPA
961 LQDILFSSPS NDAKSSENGG SGTASNTLNE PSNHRAEAKG SVSSTKRREA LVDDVIGCAS
1021 SKVTTSIDSA VLSGGGKREE GLRNKNKPKP KEKNENQSRS THPTGPASRG RGGNAGDGAA
1081 AGVDEEAPID FSKLAFHDLE EIDEQADIGN WFEGLQDIDT AGLDEVPMDD LSFMFG
//