LOCUS RID68818.1 829 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-1024
PROTEIN_ID RID68818.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00955"
/db_xref="Phytozome:Brara.C00955"
intron_pos 38:0 (1/15)
intron_pos 105:1 (2/15)
intron_pos 160:2 (3/15)
intron_pos 235:0 (4/15)
intron_pos 260:2 (5/15)
intron_pos 323:1 (6/15)
intron_pos 356:0 (7/15)
intron_pos 400:2 (8/15)
intron_pos 443:2 (9/15)
intron_pos 560:0 (10/15)
intron_pos 600:2 (11/15)
intron_pos 637:2 (12/15)
intron_pos 699:2 (13/15)
intron_pos 758:2 (14/15)
intron_pos 797:0 (15/15)
BEGIN
1 MTTSSSSMEN GGGSSSSSGS SSLHGCMQEF KLFQTHSNFY MIGWNGSGVY RVLKIDRLGA
61 SELNVSEDST AYTKKECYEL LKRIHEGNKA TGGLKRVAVC YGIIGFIKFL GPYYMLIITE
121 RREIGEICGH RVYEVSKSEM ISLQHSSVLG NIANSRDENR YKRLLCMVDL TKDFFFSYSY
181 NIMRSFQKNV CDHESGGTLY KKMFVWNEFL TRGIRHHLRN TVWTVALVYG FFKQTTLSEA
241 GRNFKLTLIA RRSRHNAGTR YLKRGINESG NVANDVETEQ IVSEDVPEDN PMQISSVVQN
301 RGSIPLFWSQ ETSRMILKPD IVLSKRDLNY EATRLHFENL VERYGIPIII LNLIKTKERR
361 PRESILRAEF ANAIDFINKD LPEENRIRFL HWDLHKHFQS KTANVLALLG KVAACALMLT
421 GFFYYQVTPA MKLDGGMSLS SSDADMSTHN SSDDDSGEYD SLEKNLPPSK NVANGDYDKP
481 GMLQRGVLRT NCIDCLDRTN VAQYAYGWAA LGQQLHALGI RDAPTIELDD RLSSALMGLY
541 ERMGDTLAYQ YGGSAAHNKV FSERRGQWRA ATQSQEFLRT LQRYYNNAYM DADKQDAINI
601 FLGTFQPEKG RQAIWELRSD SRSNGQNGEI SIEEDERFLV KRCLSDGNIL HESRTPMSAM
661 SSKHESISHK GFVSSRQVNH VTSESSPDMP AAGDVSLSRC TPSMPSTHFF GDAKKIQHNG
721 SSSYYLSEQE DMSSVSNFVD VEWLSSSENL CENDQLYRPS ALTSYSTAEV SSSENIISEV
781 KQSTPAISEN GSSSRKGKEP MEGEPSTKIH DDFTDSFKQW VAFGEALCH
//