LOCUS RID68734.1 709 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-939
PROTEIN_ID RID68734.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00875"
/db_xref="Phytozome:Brara.C00875"
intron_pos 84:1 (1/18)
intron_pos 137:0 (2/18)
intron_pos 194:2 (3/18)
intron_pos 235:0 (4/18)
intron_pos 260:0 (5/18)
intron_pos 291:2 (6/18)
intron_pos 317:0 (7/18)
intron_pos 353:0 (8/18)
intron_pos 396:0 (9/18)
intron_pos 419:0 (10/18)
intron_pos 439:0 (11/18)
intron_pos 480:1 (12/18)
intron_pos 527:0 (13/18)
intron_pos 548:1 (14/18)
intron_pos 575:0 (15/18)
intron_pos 596:2 (16/18)
intron_pos 636:0 (17/18)
intron_pos 677:2 (18/18)
BEGIN
1 MEQQRGSRSF PERKGQKRKL EEGPPAEDPQ ISPSTTTDAA PHAALLSEVA AQVSVLNSAF
61 SWKESDRAAA KRAAQVLAEL AKNEDLVSVI VDGGAVPALT THLQSPPYCE GDLAHKPFEH
121 EVEKGSAFAL GLLAIKPEYQ NLIVDKGALP HLVSLLKRSK DCSTSRALNS VIRRAADAIT
181 NLAHENSSIK TRVRLEGGIP PLVELLEYSD SKVQRAAAGA LRTLAFKNDD NKNLIVECNA
241 LPTLILMLGS EDAAIHYEAV GVIGNLVHSS PNIKKEVISS GALQPVIGLL SSCCPESQRE
301 AALLLGQFAS TDSDCKVHIV QRGAVRPLIE MLQSADVQLK EMSAFALGRL AQDSHNQAGI
361 AHSGGLEPLL KLLSSRNGSL QHNAAFALYG LADNEDNVSG FIRVGGVQKL QDEEFIVQAT
421 KDCVSKTLKR LEEKIHGRVL RHLLYLMRIS EKSIQRRVGL ALAHFCSPED QRTIFIDENG
481 LELLLGLLGS TNTKQQLDGA AALYRLANKS MALSPVDAAP PSPTQRVYLG EQYVNNATLS
541 DVTFLVEGRK FYAHRICLLA SSDAFRAMFD GGYREKDARD IEIPNIKWEV FELMMRFIYT
601 GSVDITIEIS QDLLRAADQY LLEGLKRLCE YTIAQDITLE NVGSMYDLSE AFHAMSLRQA
661 CILFILEHFE KLSSMHGQNE LVQRTIPEIR EYFCRALKKS TTNLQSLRL
//