LOCUS RID68678.1 1282 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-884
PROTEIN_ID RID68678.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00823"
/db_xref="Phytozome:Brara.C00823"
intron_pos 19:0 (1/29)
intron_pos 43:1 (2/29)
intron_pos 65:0 (3/29)
intron_pos 91:0 (4/29)
intron_pos 131:0 (5/29)
intron_pos 154:2 (6/29)
intron_pos 185:2 (7/29)
intron_pos 209:0 (8/29)
intron_pos 230:2 (9/29)
intron_pos 296:0 (10/29)
intron_pos 346:2 (11/29)
intron_pos 378:0 (12/29)
intron_pos 448:0 (13/29)
intron_pos 518:2 (14/29)
intron_pos 567:0 (15/29)
intron_pos 623:1 (16/29)
intron_pos 649:0 (17/29)
intron_pos 706:0 (18/29)
intron_pos 731:2 (19/29)
intron_pos 766:0 (20/29)
intron_pos 806:0 (21/29)
intron_pos 854:0 (22/29)
intron_pos 902:0 (23/29)
intron_pos 950:0 (24/29)
intron_pos 979:1 (25/29)
intron_pos 1022:0 (26/29)
intron_pos 1090:1 (27/29)
intron_pos 1148:0 (28/29)
intron_pos 1217:0 (29/29)
BEGIN
1 MAVPVEEAIA ALSTFSLEDE QPEVQGPAVM VSAERAATDS PIEYSDVAAY RLSLSEDTKA
61 LNQLNTLIQE GKEMASILYT YRSCVKALPQ LPESMKHSQA DLYLETYQVL DLEMSRLREI
121 QRWQSSASAK LAADMQRFSR PERRINGPTV THLWSMLKLL DVLVQLDHLK NAKASIPNDF
181 SWYKRTFTQV SAQWQDTDTM REELDDLQIF LSTRWAILLN LHVEMFRVNN VEDILQVLIV
241 FIVESLELDF ALLFPERYIL LRVLPVLVVL ATPSEKDTEA LYKRVKLNRM INIFKNDPVI
301 PAFPDLHLSP AAILKELSVY FQKFSSQTRL LTLPAPHELP PREALEYQRH YLIVNHIGAL
361 RAEHDDFTIR FASSMNQLLL LKSNDGAYTE WCREVKGNMY DMVVEGFQLL SRWTARIWEQ
421 SAWKFSRPCR DAAETQEASG SYSDYEKVVR YNYTAEERRA LVELVGYIKS VGSMLQRCDT
481 LVADALWETI HAEVQDFVQN TLATMLRTTF RKKKDLSRIL SDMRTLSADW MANTRPEHEM
541 PSSQHGGDES KANFFYPRPV APTAAQVHCL QFLIYEVVSG GNLRRPGGFF GNNGSEIPVN
601 DLKQLETFFY KLSFFLHILD YSASIGILTD LGFLWFREFY LESSRVIQFP IECSLPWMLI
661 DHILEAPNSG LLESVLLPFD IYNDSAQQAL VVLRQRFLYD EIEAEVDHGF DIFVSRLSES
721 IFTYYKSWSA SELLDPSFLF ALDNGEKFSI QPVRFTALFK MTKVKILGRT INLRSLIAQR
781 MNKTFRENLE FLFDRFESQD LCAVVELEKL IDILKHSHEL LSQDLTIDPF SLMLNEMQEN
841 ISLVSFSSRL ATQIWSEMQS DFLPNFILCN TTQRFVRSSK VPPTQKPSVP SAKPSFYCGT
901 QDLNAAHQSF ARLHSGFFGI PHLFSIVKLL GSRSLPWLIR ALLDHISNKI TTLEPMISGL
961 QEALPKSIGL LSFDGGVAGC MRLIREQLNW GTKAELKTEV LRGIKEIGSV IYTMGLLDIV
1021 LREVDTKRFM QTAPWLGLIP GAEGQVVNAQ EGESPLVNLL KSATSAVVSS PGCLNPAAFY
1081 TMSKQAEAAD LLYKANMNGG SVLEYTLAFT SASLDKYCSK WSAPPKTGFV DITTSKDFYR
1141 IYGGLQIGYL EEITVPQSAQ QEVLGDSIAW GGCTIIYLLG QQLHFELFDF SYQVLNVSEV
1201 ETVSASHTHR NPQVLQGWEG LLEGMKKARR LNNHVFSMLK ARCPLEDKTA CAIKQSGAPL
1261 PRVRFENTVS AFESLPQKGT VG
//