LOCUS RID68643.1 1394 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-849
PROTEIN_ID RID68643.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00789"
/db_xref="Phytozome:Brara.C00789"
intron_pos 990:0 (1/1)
BEGIN
1 MMSDRSELRV HLRRSFDIMI KTSYRWICDH PFLLGFVAFL YLLHRTCPLL FSALVVASPV
61 LVCTLVLLGT ILSFGEPNVP EIEKEQPETV YQAAPFRTEV SRDPFSSVVV ERGGGGGESF
121 NVERFLGREK EEEEDVVLDG KDVADGLVEN LLSEVDDDGR PFDYRPLVDE TLDEVKRGGT
181 HVRFEERAFV VDVDKKRDGV IGTEQSLDAM MDDSKEDQMD VSPVSPWRPM RHEEDEDDDA
241 DDSLDSGSDG AESSSPDPSM TDIIPMLDEL HPLLHTENPG RGAADLDGSD AASEGPHRSS
301 SDEGMESDVD SESNGEEGDN ENEEEEEEDE EEEEEEEEKK EEKDDESKSA IKWTEADQKN
361 VMDLGTLELE RNQRLENLIA RRRARHNMRM MAEKNLIDFD SAEIPVNMPP ISTARNPFDL
421 PYDPYDDMDI PGSAPSIMFA RKNPFDSPFD PNEEKADLKG EGFEEELSSQ QPKDQVFRRH
481 ESFSVGPSML GGPRHDRLRP FFVLERLANE GTSYYPYERQ LSEVSESKVS SVPDTESVCT
541 ILEDDEKKVD EQDADRDTEK ASDRDEEKMH SASDHDDEEK SHSGSDRDED KSHTSEDSDS
601 DEQGDSRNLH HDVAEIVLGS PEAHHEESNV TDGETSDKSK HDNEEDSSDS DSSLSETEEE
661 MGDVSENEAT MVSEQKVDLH EESEASSFGG GLEIHVPRGV DDDYHHDHDV APAFITARPS
721 LGDLAAHDLS VDDHHVEPVY DTSPRSGSRF PSFSSVSSDY KPDLPEKSVE EVQENADNEG
781 EKGEVHSTPD ETERSTREVG ESSSHVTGEA NLHTGEVGGV EGHEDLHEEV KEVSSGMLEQ
841 HLPVEHTSSP DVVHDIAETS VNRSVSEGIM HEEEEDKQKD EAILQTFNAD IPIDSYSTLS
901 SGAVEYAETH SFNDEDVQQS EQDSVQSSVS DAKEEAHPNQ TMDIEVDSVN ASVQNVGSEE
961 TTPYESDREL TWSDKSVVEQ SSPGPGEDQA PARAAPVSVV FSRNITFHEY HDAPEDTADL
1021 SCLTSDTSSS PAESPEYKTP MVGEGSRAEF FQETVYDELD HVVERLDQLT DLHAISETPP
1081 EVINEEADEI KEIDEGLLSE LDTIGDFSVK EVVTDSEPGP SSIGSETANE LTEALPVLEA
1141 RSVEDIESAF QQINEGSEVE DVILPSTVQD QLAQENYGTE SDLTVVEATS KDDLDTAMNQ
1201 AVEESMGKQP KSPEPEGGSG EVKSGVETES PGSSVEERSL DETHVHLNNT PEKEDKKEEE
1261 ESRLEEGTTS DASSIETRAL EEIPKPSEPL EEMAMEVVSE RVVNPTETID SGNVTVSDEV
1321 VTEEAKAETS SSADAIVQSH DSKETPESSG ESIAEQKEKT EKKKEKKKKK KEKKSKSNSS
1381 SSSSSSSSSS SDSD
//