LOCUS RID68586.1 1212 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-792
PROTEIN_ID RID68586.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00734"
/db_xref="Phytozome:Brara.C00734"
intron_pos 2:0 (1/10)
intron_pos 211:0 (2/10)
intron_pos 239:2 (3/10)
intron_pos 269:1 (4/10)
intron_pos 363:1 (5/10)
intron_pos 509:1 (6/10)
intron_pos 752:2 (7/10)
intron_pos 829:2 (8/10)
intron_pos 871:1 (9/10)
intron_pos 966:0 (10/10)
BEGIN
1 MADKRVGKRS TNQRGFSKMD SGICNVCSAP CSSCIHRNVA FTGSKSDESS DENGHGVAGS
61 QFSVNEDRLL PSNNTASEAS NLVNSSHDAL SENAESRETI RRSGISDDSG AVATTSKTSF
121 SGSRMNHKGS ASANVLDQSS TRLEGQEDGI LPESEKLGSQ GDIDKEEPSV EGSTPSGQNG
181 KDVKSSKSAS ESVSSAMSES ESDSEMVLHD VKVCDICGDA GREDLLAICT GCSDGAEHIY
241 CMRERLNAVP EGDWFCEECQ TVAEKQKQEA KRKRETEVIL SPHSSGKRHA DKIESAPDAK
301 RQAVEDSTGS PKKPVLPRIG ALSRETSFKG LDSPRGKLSH QSSFTDKMEG ARSTGSQLHP
361 PKGGFLKSSS FNSSSSKPKV QLMDDDVILP RKKIRKDSSL GNLSKSMSSK TIDSGSSSGN
421 DSQAKMLASK VYHSQEGKSP KQLKGRSTEA NAPAASTDQK LTSRSSLGSS YANSTRDSKG
481 LQSDGKRGSL TKQVSNLNRN RLESSVTSGG DIPTNGKCNA REQSSSQADS KDELTSTSCA
541 GEGVPSNGNV ASQDRLPWSR EFREVGKKSK DGFGKRQRSS LLSHAKGLPS SQKGGETAES
601 NETSGVSDSD LPTPKNARED INKGNRLRAA VDAALRKKPS FGKNRVLEQC DTSLASNVHP
661 SSDKSLQTQL PPKMHTTSWP APDPYKQTIV TNEKQLVPSG VDAVIPSRSV ELDMKPEVNI
721 PSLKSVMRDW PLVSPPALLR SSAIPDHESI WQGNLEVRKA RNQSAMHSGM QAHLSTLASP
781 KVAEVVNKFP EKFSLNEVPR LSTWPAQFQD SGTKEDHIAL FFFAKDVESY ERNYKPLVDN
841 MIKKDLALKG NLDNVELLIF ASNQLPPNCQ RWNMLYFLWG VFRGRKEICT NPQKNTSLPA
901 SDVLPRDQDP NNLCQTRSPS KHLEKASSLR ESPHKMQETQ SRKHVLSHEN PSDRESSVER
961 SSITKEETAR KEDEPGANHV PCQANGSNSE DSLVKKVQQI VEQDLGGRKD LPLTVTPPSQ
1021 VNPLEKDLNC SQASHRKRQV WELTNPATVN QKMELLYEAS REGSPHKKLK TENENSSVTF
1081 GNDSGVMKKS PKGVFPLDLN VEGEDMELVD DLIPFGNNNG NDEDNNRRLG GTVPDLELPF
1141 GGEETTQEDT TRLLPFLAGK NNSGEQSSRS MNKAKEKEEE DDSASLSLSL SFPGEEKKNV
1201 NTPFFLFRDF PR
//