LOCUS RID68566.1 1026 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-772
PROTEIN_ID RID68566.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00714"
/db_xref="Phytozome:Brara.C00714"
intron_pos 42:1 (1/14)
intron_pos 129:2 (2/14)
intron_pos 162:1 (3/14)
intron_pos 179:0 (4/14)
intron_pos 196:2 (5/14)
intron_pos 230:0 (6/14)
intron_pos 404:1 (7/14)
intron_pos 540:1 (8/14)
intron_pos 586:2 (9/14)
intron_pos 632:1 (10/14)
intron_pos 902:0 (11/14)
intron_pos 913:1 (12/14)
intron_pos 951:2 (13/14)
intron_pos 995:0 (14/14)
BEGIN
1 MFYSQFILAK KGPLGTIWIA AHLERKLRKN QVADTDIGVS VDSILFPEAP IALRLSSHLL
61 LGVVRIYSKK VNYLFDDCSE ALLKVKQAFR SAAVDLPPEE STAPYHSITL PETFDLDDFE
121 LPDNEIFQGN YVDHHVSTRE QITLQDTMDG VVYSTSQFGL DERFGDGDTS QAALELEEEV
181 FQGKDLIGSD DEGVQGTDHN AYMDAATPGI KDDTVGVSEA TPRDFNQEQV EDLAMRNEFI
241 EDAQAPQTPG LVEVPNSSSV REQLGCDDHM EVDDLNAEEG RKISEELDAN ETHKPDEDLP
301 SESEVVPMEV DKSLIDENAN AQNEPEEERP EHVHVSTSPC CSHMITEVED PGQAITEAGT
361 DDNNVVADKS DAVPSAESPG EPTMNNAEHC LSQEPKDPGE ENQDHFAIAT EVNQETDSSI
421 QGDGQADSKP DEQLNEQLVT GCTDSDLPAP EKVLAAPETE RQGDENGFMV ESTPDKEDPG
481 TCNEDAGNNN NKITGKKRTF TESTITAESL NSVESVELIQ SKRTADSVPD DDDLLSSILV
541 GKSSFLKMRS TPVLEIATTK RSRAAPRSTA TKRKVLMDDP MVLHGDLIRE QLTNTEGIRR
601 VRKKAPCTVA EIVMLQRQAL EDGLLKEPIF TGMSVELVSL HNEPFDLRGI TIIENDDRHT
661 SVGAVEDNEC SAPQTRPDGS EEQPAEALTH PEDQQNIDQQ EEEEVKDDNE LGETACELEV
721 PKEGDGAAAD EVSLVVNDEI GQMPAEDKVD HVEGIEDLQV EGYHDGGVGG EDVCVIEITE
781 GDVDHNAILN ETDLKVEDEL PHEDKKTDAS AEVSEIGVDN QTQCDNTIGY IENGHVEAGD
841 LALESLSEPL VEANNDGVNP ETEPDNNYEP HNDVFNEEAT NMQSAPDEDP TSRDGFMRYN
901 DEMDTMEVAH DTGFLNVDDD EVDEDHEEDD GMQEGDETRL LENSGWSSRT RAVAKYLQTI
961 FDKEAENGKS VVVADKLLAG KTRKEASRMF FETLVLKTRD YIQVEQAKPY ESITIKPRPK
1021 LTKSIF
//