LOCUS RID68493.1 1350 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-699
PROTEIN_ID RID68493.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00644"
/db_xref="Phytozome:Brara.C00644"
intron_pos 26:2 (1/20)
intron_pos 80:2 (2/20)
intron_pos 143:0 (3/20)
intron_pos 176:0 (4/20)
intron_pos 232:0 (5/20)
intron_pos 326:1 (6/20)
intron_pos 372:0 (7/20)
intron_pos 397:1 (8/20)
intron_pos 409:1 (9/20)
intron_pos 478:0 (10/20)
intron_pos 529:2 (11/20)
intron_pos 572:1 (12/20)
intron_pos 657:1 (13/20)
intron_pos 873:1 (14/20)
intron_pos 1080:0 (15/20)
intron_pos 1113:2 (16/20)
intron_pos 1160:0 (17/20)
intron_pos 1211:0 (18/20)
intron_pos 1266:2 (19/20)
intron_pos 1304:0 (20/20)
BEGIN
1 MKRIRDDVYS SGSQFKRPLP SSRGESYVQS PVPGDGGVSS QKLTTDDALS YLKDVKEMFQ
61 DQRDKYDMFL EVMKDFKAQR TDTSGVIARV KELFKGHNNL IFGFNTFLPK GFEITLDEVE
121 EETPPKKTVE FEEAISFVNK IKKRFQNDEG VYKSFLEILN MYRKDDKDIT EVYNEVSALF
181 EDHLDLLEEF TRFLPESLAA HSAAQLIRSQ AQRYHDRGSG PPLVRRMLME KDRRRERAVA
241 SRGDRDHSVD RSDQNDDKAM VKMHREPKKR VDKENRERRS RDLDDGEAEQ DNLHHFSEKR
301 KSSRRTEGFE AYSGPASHSE KNNLKSMYNQ AFVFCEKVKE RLCSQDDYQT FLKCLNIFSN
361 GIIQRKELQN LVSDLLGKFP DLMDEFNQFF ERCESNDGFQ HLAGVMSKKS LSSEEHLSRP
421 VKGEEKETET EREHKRDLDA AKEKERSNDK YMGKSIQELD LSDCERCTPS YRLLPSDYPI
481 PSVRHRQKLG AAVLNDHWVS VTSGSEDYSF KHMRRNQYEE SLFRCEDDRF ELDMLLESVG
541 SAAKSAEELL NNIVEKKISI EGSFRVEDHF TALNLRCIER LYGDHGLDVT DLIRKNPAAA
601 LPVILTRLKQ KQEEWTKCRE DFNAVWADVY AKNHYKSLDH RSFYFKQQDS KNLSAKALVT
661 EIKDLKEKSQ EEDDVLLSVA AGHRQPIISH FEYEYLDKTI HEDLFKLVQF SCEEICSTKE
721 QIGKVLRLWK SFLEMMLGVP TRAKGSNSVE DVVETKHHGA LTSGEVNVSS DSTNLVSRQL
781 KFAANGDEYA SSGVSKHGVI SLLKRDSSAK ENCKDGDPAN KDVATCSAVK LQKDQENGNG
841 ADKRSGDVDD RVATFPNGVE NSIGKVGSGN SSGSRGILSK PGDAIENTDT IVIANGLLPD
901 ASKANSNYDE PGGPSNIEKE EGELSPIGDS EDNFVVYEDR GLKSTAKPEH SVEAEGENDD
961 DADDEDGDGD GDDASEGGED ASGTESIGDE CSQDGNGMEE EGEHDEIDGK AESQGEAEGM
1021 DSHLIEEDNR LLPLSERVLL SVKPLSKHVA AAALLDERQK DSRVFYGNDD FYVLFRLHRV
1081 LYERILSAKT YCTGSELNRR NTKDTSSPDP YARFMSALFS LLNGSAESSK FEDECRAIIG
1141 NQSYVLFTLE KLIYKLVKQL QAVVADDMDN KLLQLYEYEK SRKPGRVIDS VYYENARILL
1201 HEENIYRLEC SSSPSRLSIQ LMDSIIEKPE AYAVSMDPTF ASYLQKEFLS NSSGKKVVPQ
1261 AIVLKRNMRG YSGLDDLAVA CKAMEGVEVI NGLECKMSCS SYKISYVLDT EDFFHRKKKK
1321 QKKPSHEKSS SEQRKLYRVE RFHKFLSASR
//