LOCUS RID68491.1 1170 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-697
PROTEIN_ID RID68491.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00643"
/db_xref="Phytozome:Brara.C00643"
intron_pos 198:0 (1/3)
intron_pos 248:0 (2/3)
intron_pos 259:0 (3/3)
BEGIN
1 MPFIGGNTRR SPPGSGSGWG QSLLPTTASS KSKLPINRKP RKRTALVNFL FTNFFFIALA
61 VSLLFLLLTL FHFGVPKPIS SRFLSSSSSS SRSNRFVKPR KSIINRRHVN NSLSVAAVVD
121 ITTKDLYDRI EFKDVDGGPW KQGWQVTYKG DEWEKEKLKI FVVPHSHNDP GWKLTVEEYY
181 QLQSRHILDT IVETLSKDSR RKFIWEEMSY LERWWRDASP SKQEALSSLV KNGQLEIVGG
241 GWVMNDEANS HYFAIIEQIA EGNMWLNDTI GVIPKNSWAI DPFGYSSTMA YLLRRMGFEN
301 MLIQRTHYEL KKELALNKNL EYIWRQSWDT METTDIFVHM MPFYSYDIPH TCGPEPAICC
361 QFDFARKRGF KYELCPWGKH PVETTQDNVQ ERASKLLDQY RKKSTLYRTN TLLIPLGDDF
421 RYISMDEAEA QFRNYQMLFD HINSDPSLNA EAKFGTLDDY FRTLREEADR VNYSRPGEVG
481 SGQVVGFPSL SGDFFTYADR QQDYWSGYYV SRPFFKAVDR VLEQTLRGAE IMMSFLLGYC
541 HRVQCEKFPT SFAYKLTAAR RNLALFQHHD GVTGTAKDHV VQDYGSRMHT SLQDLQIFMS
601 KAIEVLLGIR QGKEKSDQSP SFFEAEQVRS KYDAQPVHKP IAAREGNLHA VILFNPSEQT
661 REEVVNVVVN RAEISVLDSN WSCVPSQISP EVQHDKTKLF TGRHRLYWKA SIPALGLRKY
721 YIANGNVECE KATQSKLKYA SEFDSFPCPS PYSCSKLDSE VAEIRNEHQT LVFDVKNGLL
781 QKIVHRNGQE TVVREEIGMY YSPDSGAYLF KPKGEAQPIV HSGGHLVTSE GLLVQEVFSY
841 PKTRWEKSPI SHSTRVFTGG NTLQDLVVEM EYHVELLGED FNDQELIVRY KTDIDNKKVF
901 YSDLNGFQMS RRETYDKIPL QGNYYPMPSL AFIQGSSGQR FSVHSRQSLG VASLEDGWLE
961 IMLDRRLVRD DGRGLGQGVM DNRAMNVVFH LLVDSNISQA DSVSNPSLLS HLVGAHLNYP
1021 INTFIAKKPQ DISVRVPQYG SFAPLAKPLP CDLHVVNFKV PRPSKYSLPL EDDNPRFAII
1081 LNRRAYDKAY CQKGRRANCT SVADEPVNFS DMFKDLAATK VKPTSLNLLQ EDMESLGYDD
1141 QEPPRDGSQG RVSISPMEIQ AYKLELRPHK
//