LOCUS RID68480.1 963 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-685
PROTEIN_ID RID68480.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00633"
/db_xref="Phytozome:Brara.C00633"
intron_pos 108:0 (1/15)
intron_pos 160:0 (2/15)
intron_pos 217:0 (3/15)
intron_pos 259:0 (4/15)
intron_pos 313:0 (5/15)
intron_pos 353:0 (6/15)
intron_pos 399:0 (7/15)
intron_pos 453:1 (8/15)
intron_pos 495:1 (9/15)
intron_pos 539:0 (10/15)
intron_pos 612:1 (11/15)
intron_pos 640:1 (12/15)
intron_pos 667:0 (13/15)
intron_pos 715:0 (14/15)
intron_pos 928:0 (15/15)
BEGIN
1 MSLIVSRARS TPLPNLLAWR ALGFRTICSG RLGLAPSSPY TPAPAGTKIL ESFKEEFEVG
61 SGVITLETGK IARFANGSVV LGMDETKVLS TVTCAKSKSP GDFLPLTVDY QEKLYAQGLI
121 PNTYMRREGA PKERELLCGR LIDRPIRPLF PSGFYHEVQI MASVLSLDGK QDPDILAANA
181 ASAALMLSDV PWGGPIGVIR LGRIDGQIVV NPTMDELSSS DLSLIYACTR DKTMMIDVQA
241 REITEKDLAA ALRLAHPEAV KYIDPQIRLA AKAGKQKKEY KLSMLSEKTL EKVADLAATR
301 IESIFTDPSK GKFERGEALD DIGKDVIKVF EDEGDQESLS ILPKAVDTVR KKVVRSRMIS
361 DGFRVDGRHL DEVRPISCES HHLPATHGSA LFSRGDTQVL CAVTLGAPGD AQNLDSIAGP
421 PKKRFMLHYS FPPFCTNEVG KKGGLNRREV GHGTLAEKAL LAVMPPEEDF PYTVRINSEV
481 MASDGSTSMA SVCGGSMALM DAGIPLRAHV AGVSVGLVTD VDPSSGEIKD YRIVTDILGL
541 EDHLGDMDFK IAGTRSGVTA IQLDIKPAGI PLDIVCESLE NAREARLQIL DHMEREINSP
601 RAQDGTYSPR LATLKYTNDA LRSLIGPMAA LKRKIEEETG ARLYFDDGTL TIVAKNQAVM
661 DKAQEKVDFI IGREIVVGGV YKGTVTSIKE YGAFVEFNGG QQGLLHMSEL SYEPVSKVSD
721 VLHIGKYITM MCIDTDVRGN IKLSLKALLP KPEPKSASGP EKVPVVKETV SVETSSFGET
781 VASLPSVVEP PQKSKLAVPA VVIRTAVECD ELEKSYPVDK NTKPKRTAAL KPDRKLKSTA
841 SKQTVTQKEE EVFKSIGPEE TVTSCGETLK KPPRKKKQSG DEAGESASVS ARKLKIGTEM
901 TAKVHQVRTH GLVLDLGGGI RGMYKFEGDE ETEFEIGDAL QVKCTSFTTK GIPVMALVDD
961 EEL
//