LOCUS RID68416.1 1382 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-622
PROTEIN_ID RID68416.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00575"
/db_xref="Phytozome:Brara.C00575"
intron_pos 470:1 (1/4)
intron_pos 498:0 (2/4)
intron_pos 1099:0 (3/4)
intron_pos 1258:0 (4/4)
BEGIN
1 MASLMYSPFT LSTSKAEHLS SLSNTTSKHS FLRRKSFSKP TNSLFKVKSA VSGNGLFTQT
61 SPEVRRIVPV KRDNVPTVKI VYVVLEAQYQ SSLSEAVQQL NKTSRFASYE VVGYLVEELR
121 DKNTYKSFCK DLEDANIFIG SLIFVEELAL KVKDAVEKER DRMDAVLVFP SMPEVMRLNK
181 LGSFSMSQLG QSKSPFFQLF KRKKGAGSAG FADSMLKLVR TLPKVLKYLP SDKAQDARLY
241 ILSLQFWLGG SPDNLQNFVK MISGSYIPAL KGVKIEYSDP VLFLDTGIWH PLAPTMYDDV
301 KEYLNWYDTR RDTNASLKRK DATVIGLVLQ RSHIVTGDDS HYVAVIMELE ARGAKVIPIF
361 AGGLDFSGPV ERYFVDPVTK QPIINSAVSL TGFALVGGPA RQDHPRAIEA LKTLDVPYLV
421 GVPLVFQTTE EWLNSTLGLH PIQVALQVAL PELDGGMEPI VFAGRDPRTG KSHALHKRVE
481 QLCIRAIRWG ELKRKTKAEK RVAITVFSFP PDKGNVGTAA YLNVFASIYS VLKDLKRDGY
541 NVEGLPETAE TLIEEILHDK EAQFSSPNLN VAYKMGVREY QSLTPYAAAL EENWGKPPGN
601 LNSDGENLLV FGKTYGNVFI GVQPTFGYEG DPMRLLFSKS ASPHHGFAAY YSYVEKIFKA
661 DAVLHFGTHG SLEFMPGKQV GMSDACFPDS LIGNIPNVYY YAANNPSEAT IAKRRSYANT
721 ISYLTPPAEN AGLYKGLKQL SELISSYQSL KDTGRGPQIV SSIISTAKQC NLDKDVDLPE
781 EGTDLSVKER DLVVGKVYSK IMEIESRLLP CGLHVIGEPP SAMEAVATLV NIAALDRAEE
841 EISSLPSILA ECVGRQIEDV YRGSDKGILS DVELLKQITD ASRGAVSAFV EKTTNDKGQV
901 VNVSDKLTSI LGFGINEPWV EYLSNTKFYR ANRDKLRTVF AFLGECLKLV VMDNELGSLM
961 QALEGKYVEP GPGGDPIRNP KVLPTGKNIH ALDPQAIPTT AAMASAKIVV DRLVERQRLE
1021 NEGKYPETIA LVLWGTDNIK TYGESLGQVL WMIGARPVAD GLGRVNRVEP VSLEELGRPR
1081 IDVVVNCSGV FRDLFINQMN LLDRAIKMVA ELDEPVEMNY VRKHAMEQAA TLGVDIREAA
1141 TRVFSNASGS YSSNISLAVE NSSWNDEKQL QDMYLSRKSF AFDSDAPGAG MAEKKQVFEM
1201 ALMTAEVTFQ NLDSSEISLT DVSHYFDSDP TNLVQSLRKD KKKPSAYIAD TTTANAQVRS
1261 LSETVRLDAR TKLLNPKWYE GMMSSGYEGV REIEKRLTNT VGWSATSGQV DNWVYEEANT
1321 TFIKDEEMLN RLMNTNPNSF RKMIQTFLEA NGRGYWETSE DNIEKLKDLY SQVEDKIEGI
1381 DR
//