LOCUS RID68412.1 948 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-618
PROTEIN_ID RID68412.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00571"
/db_xref="Phytozome:Brara.C00571"
intron_pos 47:0 (1/8)
intron_pos 92:0 (2/8)
intron_pos 133:2 (3/8)
intron_pos 168:2 (4/8)
intron_pos 266:2 (5/8)
intron_pos 378:0 (6/8)
intron_pos 441:0 (7/8)
intron_pos 543:0 (8/8)
BEGIN
1 MYAAAEGREL VQILLAAGAD PTAQDTQHGR TALHTAAMAN NVELVRVILD AGVNANIRNV
61 HNTIPLHMAL ARGANACVSL LLESGSDCNI QDDEGDNAFH IAADAAKMIR ENLDWLIVML
121 KRPDAAVDVR NHSGKTVRDF LEALPREWIS EDLMEALLKR GVHLSPTIYE IGDWVKFKRG
181 ITTPLHGWQG AKPKSVGFVQ TILEKEDMIV AFCSGEARVL ASEVVKLIPL DRGQHVRLRK
241 DVKEPRFVIA LHCEFFSEDA TKAVKVFGWR GQSRDSVGTV LCVDEDGILR VGFPGASRGW
301 KADPAEMERV EEFKVGDWVR IRQNLTSAKH GFGSVVPGSM GIVYCVRPDS SLLVELSYLP
361 NPWHCEPEEV EPATPFRIGD RVCVKRSVAE PRYAWGGETH HSVGKISEIE NDGLLIIEIP
421 NRPIPWQADP SDMEKIDDFK VGDWVRVKAS VSSPKYGWED ITRNSIGVMH SLDEDGDVGI
481 AFCFRSKPFS CSVTDVEKVV PFHVGQEIHM IPSIAQPRLG WSNETPATIG KIMRIDMDGT
541 LSAQVTGRQT LWKVSPGDAE MLSGFEVGDW VRSKPSLGSR PSYDWFSVGR DSIAVVHSIQ
601 EAGYLELACC FRKGRWSTHY TDLEKIPSLK AGQFVRFQKG LTEPRWGWRG AKPDSRGIIT
661 TVHADGEVRV AFFGLPGLWK GDPADLEVER MFEVGEWVRL KEGVPSWKSI GPGSVGVVHG
721 VGYEGDEWDG TISVSFCGEQ ERWTGSFTHL EKAKKLVVGQ KTRVKLAVKQ PRFGWSGHSH
781 GSVGTIAAID ADGKLRIYTP AGSKTWMLDP SEVETIEEEE LKIGDWVRVK PSITTPTYQW
841 GEVNPSSIGV VHRMEDGDLW VSFCFLDRLW LCKAVEMERI RPFGIGDKVK IKNGLVTPRW
901 GWGMETHASK GHVVGVDANG KLRIKFLWRE GRPWIGDPAD IVLDEPSG
//