LOCUS RID68398.1 831 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-604
PROTEIN_ID RID68398.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00557"
/db_xref="Phytozome:Brara.C00557"
intron_pos 16:0 (1/18)
intron_pos 41:2 (2/18)
intron_pos 75:1 (3/18)
intron_pos 99:0 (4/18)
intron_pos 120:0 (5/18)
intron_pos 135:0 (6/18)
intron_pos 157:0 (7/18)
intron_pos 173:0 (8/18)
intron_pos 205:0 (9/18)
intron_pos 219:0 (10/18)
intron_pos 291:0 (11/18)
intron_pos 335:0 (12/18)
intron_pos 410:0 (13/18)
intron_pos 439:0 (14/18)
intron_pos 551:0 (15/18)
intron_pos 599:2 (16/18)
intron_pos 628:0 (17/18)
intron_pos 788:2 (18/18)
BEGIN
1 MHFTKLDDSP MFRKQLQSME ESAEISRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET
61 FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE HILNDRLLQF ANMDLHEVKE
121 ARKRFDKASL TYDQAREKFL SLRKGTRSDV AAALEQELHT SRSMFEQARF NLVTTLSNVE
181 AKKRFEFLEA VSGTMDAHLR YFKQGYELLH QMEPYINQVL TYAKQSRERS NYEQAALNEK
241 MQEYKRQVDR ESRFGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301 KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGASSQL SGQRNSSELG SGLLSRWLSS
361 NNHGGVHDEK SVARHTVNLL TSTIKVDADQ SDLRFCFRII SPSKNYTLQA ESALDQMDWI
421 EKITGVIASL LSSQVPERCL PGSPMGSGHH RSASESSSYE SSEYDIPNTE EFVCERSFLG
481 YNERTSRNFQ PQRSIRKGEK PIDVLKKVSG NDKCADCGAP EPDWASLNLG VLVCIECSGV
541 HRNLGVHISK VRSLTLDVKV WEPSVITLFQ ALGNTFANTV WEELLHSRSA FHVEPGLTGS
601 DKSRVMVTGK PSYADMISIK EKYIQAKYAE KLFVRRSRDC DFPQSVAQQM WDAVSGNDKK
661 AVYRLIVNGE ADVNSVYDHQ SSSTSSLTLS RVMLSPEKPP TREEVLLRLR NELLDRNSSG
721 CSSSIIPPEE TGGCSLLHCA CEKADIGMVE LLLQYGANVN AKDSSGQTPL HYCILRGKSA
781 VARLLLTRGA DPEAANGEGK TALDIAAESK FTDAEVLALL SEAANGYNHR Q
//