LOCUS RID68379.1 855 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-585
PROTEIN_ID RID68379.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00538"
/db_xref="Phytozome:Brara.C00538"
intron_pos 168:1 (1/11)
intron_pos 236:0 (2/11)
intron_pos 302:0 (3/11)
intron_pos 326:0 (4/11)
intron_pos 358:0 (5/11)
intron_pos 384:2 (6/11)
intron_pos 410:0 (7/11)
intron_pos 480:1 (8/11)
intron_pos 547:0 (9/11)
intron_pos 582:1 (10/11)
intron_pos 612:1 (11/11)
BEGIN
1 MKSCLIITFA LLLLYIISVL CLAKECTNTP SQLSSHTFRN ALLQSKNESL KTEMFSHYHL
61 TPTDDTAWSS LLPRKMLREE EDEYGWTMMY RKIKNSDSFL KEVSLHDVRL DPNTFHWRAQ
121 QTNLEYLLML DVDSLAWSFR KAAGLDAPGS YYGGWERPDS ELRGHFVGHY LSATAYMWAS
181 THNNTLKEKM SALVSALSAC QQKLGTGYLS AFPSSFFDRF EAITPVWAPY YTIHKILAGL
241 VDQYKLAGNI QALKMATWMG DYFYGRVRNV IKTYSVERHW QSLNEETGGM NDVLYQIYSI
301 TGDSKYLLLA HLFDKPCFLG VLAVQADDIS GFHSNTHIPI VVGSQLRYEI TGDPLHKEIS
361 MFFMDIVNAS HSYATGGTSV NEFWQDPKRM ATTLQTENEE SCTTYNMLKV SRNLFRWTKE
421 VSYADYYERA LTNGVLGIQR GTEPGLMIYM LPLGKGVSKA VTYHGWGTPY DSFWCCYGTG
481 VESFSKLGDS IYFQEDGESP SLYVAQYISS SLDWKSAGLT LSQKVKPVVS WDPYMRVTFS
541 FSSSKGGMGK EFTLNLRIPV WTNSESAKVS FNGQPLKVPA SGNFLPIKQN WKSGDQVTME
601 LPLSIRTEAI KDDRPEYSSL QAILYGPYLL AGLTSRDWSI TTQPKDGKWI SSIPETHNSH
661 LVTLSQQSGN ISYVLSNNNQ TITMEVSPAP GTEKAVAATF RLVTADSKGK VSIPEELIGS
721 LVKVEPFDFP GMLVSQATDS SLAVQDSTSI EASSFRLVAG VDGKEGSVSL RLESKKGCFV
781 YSDETLKAGM KLKLKCDSDA SDDKFKQGAS FRLRKGMSQY NPMSFVMSGT QRNFVLSPLF
841 SLRDETYNVY FSVQT
//