LOCUS RID68295.1 855 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-501
PROTEIN_ID RID68295.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00465"
/db_xref="Phytozome:Brara.C00465"
intron_pos 28:2 (1/10)
intron_pos 47:0 (2/10)
intron_pos 66:1 (3/10)
intron_pos 98:0 (4/10)
intron_pos 132:2 (5/10)
intron_pos 175:2 (6/10)
intron_pos 651:0 (7/10)
intron_pos 725:2 (8/10)
intron_pos 764:0 (9/10)
intron_pos 826:0 (10/10)
BEGIN
1 MESECATTIS TPPPDGLTEG NPPKSRQGRT SGPTRRSTRG QWTAEEDEIL RKAVHNFKGK
61 NWKKIAEYFK DRTDVQCLHR WQKVLNPELV KGPWTKEEDD MIVQLIQKYG PKKWSTIARY
121 LPGRIGKQCR ERWHNHLNPT INKEAWTQEE ELVLIRAHQV YGNRWAELTK FLPGRSDNGI
181 KNHWHSSVKK KLDSYMSSGL LDQYQAMPLA PYERSSTLQS IDGNGCVSGQ AEKEVENCQI
241 PSMAGCSISV RDYQSGMINM EHHFHPCENS HKNQYYYPEL EDISVSISEL SYDMEDCSQF
301 PDHNVSSQDY HFDFQELSDI SLEMRHSMSE LPMPYAKESK EASIGGANST SNRDVATYTN
361 TANVSETECC RILFVDQESE GLSVSRPSTQ EPNEVSSIKS PMQSSSSKSI ATAASGKETL
421 RPAPLIISPD KFSKKSSLIC HPFEAEPNSR TNETGGFITC ANNSSEEDHS YHLNDSKKLV
481 PVNDFASLAE VKPHSLPKHE PVEQQHHEDK GASSSSLSFP SLDLPVFSTD LLQSKNDPLH
541 DYSPLGIRKL LMSTMTCMSP LRLWESPTGK KTLVGAKSIL RKRTRDLLTP LSEKRSDKKL
601 EIDIAASLSK DFSRLDVMFD ESESREDSMS LEKLEQSCLD ASVKEKGVEN VESVSGVLCE
661 SNTNKQVLSP PGQSVSKTEK AQVSTPRNHL HSSASLCLVI NSPSRARNTE GHHVDNETRN
721 ENFSIFCGTP FRRGLESPSA WKSPFYVNSL LHSPRFDTDI TIEDMGYIFS PGERSYGSIG
781 LMTQRNEHTS AFAAFDAMEV SLSASNYDDA RKMKELDKEN NDPLLAERRV LDFNDCESPT
841 KVTEEPSSYL LKGCR
//