LOCUS RID68282.1 1039 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-488
PROTEIN_ID RID68282.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00452"
/db_xref="Phytozome:Brara.C00452"
intron_pos 62:0 (1/12)
intron_pos 92:0 (2/12)
intron_pos 173:2 (3/12)
intron_pos 195:0 (4/12)
intron_pos 429:0 (5/12)
intron_pos 464:0 (6/12)
intron_pos 508:0 (7/12)
intron_pos 567:0 (8/12)
intron_pos 585:0 (9/12)
intron_pos 606:0 (10/12)
intron_pos 905:0 (11/12)
intron_pos 947:2 (12/12)
BEGIN
1 MVGNDWVNSY LEAILAAEPG IGDSKSSLLL RERGHFSPSR YFVEEVITGF DETDLHRSWV
61 QAAATRSPQE RNTRLENLCW RIWNLARQKK KVEGKNAKRA AKRHLLREKA RKEVTADMSE
121 DFSEGEKADV PGEIPTLSDG NTKGRMSRVS SVDVFENWFA QHKEKKLYIV LISLHGLIRG
181 ENMELGRDSD TGGQVKYVVE LARALASMPG VYRVDLLTRQ VTAPDVDSSY SEPTEMLNPL
241 DTDSTEQEHG ESSGAYIVRI PFGPKDKYVP KELLWPHIPE FVDRALSYIM KISKALDEEI
301 FEGGGGQVWP VSIHGHYADA GDSAALLSGA LNVPMVFTGH SLGRDKLEQL LKQGRPKEEI
361 NANYKIMRRI EAEELCLDAS EIIITSTRQE IDEQWRLYDG FDPVLERKLR ARMKRGVSCL
421 GRFMPRTVVI PPGMEFHHIV PHDVDADGDD EDPQSPDPPI WSEIMRFFSN PRKPMILALA
481 RPDPKKNLVT LVKAFGECRP LRELANLTLI MGNRNDIDEL STTNSSVLLS ILKLIDKYDL
541 YGQVAMPKHH KQSDVPEIYR LAAKTKGVFI NPAFIEPFGL TLIEAGAHGL PTVATINGGP
601 VDIHRVLDNG LLVDPHDQQA ISDALLKLVS DKHLWTRCRQ NGLKNIHLFS WPEHCKTYLA
661 RIASCKQRSP KWQRVEFENS DPDSPSDSLR DIHDISLNLK LSLDGEKSSV DTNLDAEDTT
721 SAERKAKLEK AVSTLSQKKI STEKIDSKMP TLKRRKHIFV ISVDCSTNSD LLSVVKTVMD
781 VAGDSTGFIL STSMTVSETH TTLLSGGLKP QDFDAVICNS GSELYFTASA SSEDNKTALP
841 YTHDPDYHSH IEFRWGGENL RKTLIRWISS VEEKKKMKQG EILCEDEASS TNYCLSFKVK
901 DPASIPPMKE LRKLMRIQAL RCNVVYCQNG ARLNVIPVLA SRSQALRYLL VRWGIDLSNM
961 VVFVGDSGDT DYEGLLGGVH KTVILKGIAS DLRELHGNRS YPMEDVTPLN SPNITEAEEC
1021 GCDAIKVALE KLGINLRKP
//