LOCUS RID68205.1 864 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-411
PROTEIN_ID RID68205.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00378"
/db_xref="Phytozome:Brara.C00378"
intron_pos 104:0 (1/9)
intron_pos 180:1 (2/9)
intron_pos 263:1 (3/9)
intron_pos 280:1 (4/9)
intron_pos 367:1 (5/9)
intron_pos 385:0 (6/9)
intron_pos 423:1 (7/9)
intron_pos 508:1 (8/9)
intron_pos 682:2 (9/9)
BEGIN
1 MAEESSFDGS EKEEIASSGN GFGDLASMDS IESRWVTQDE DDDSVNGADD DDDDDDDEFY
61 GTGLESEDEE VSEHRLLIRT GRRVDSFDVE ALEVPGASRI DYEDLTVGRR VLLAFQTLGV
121 VFGDVGTSPL YTFSVMFSKS PVKEKEDVIG ALSLVLYTLL LIPLIKYVLV VLWANDDGEG
181 GTFALYSLIS RHAKISLIPN QLRSDTRISS FRLKVPCPEL ERSLNLKEKL ENSLVLKKML
241 LVLVLAGTAM VIADGVVTPA MSVMSAVGGL KVGVDAVEQD QVVMISVAFL VILFSLQKYG
301 TSKMGLVVGP ALLLWFCCLA GIGIHNLLKY DKSVYRAFNP IHIYYFFQRN SINAWYALGG
361 CILCATGSEA LFADLCYFSV RSVQLTFVCL VLPCLMLGYM GQAAYLMENH ADASQAFFSS
421 VPGAAFWPVL FIANVAALIA SRTMTTATFS CIKQSTALGC FPRLKIIHTS RKFMGQIYIP
481 VLNWFLLAVC LVVVCSISSI NEIGNAYGMA ELGVMMTTTI LVTLIMLLIW QINIVVVTAF
541 LIVFLGVELI FFSSVIASVG DGSWIILVFA VIMFGIMYVW NYGSKIRYET EVEQKMSMDL
601 MRELGSNLGT IRAPGIGLLY NELVKGVPAI FGHFLTTLPA IHSMVIFVCI KYVPVPVVPQ
661 NERFLFRRVC TKSYHLFRCI ARYGYKDVRK ENHQVFEQLL IESLEKFIRR EAQERSLESD
721 GRNDSDSEED FSGSTLVMGP NGSMYSMGVP LLSEYRDLNK PITELNSSSN HTSHHPFDTS
781 SESSVSEAEQ SLERELSFIH KAKEIGVVYL LGHGDIRARK DSWFVKKLVI NYFYAFLRKN
841 CRRGTANLSV PQSHLMKVDM TYMV
//