LOCUS RID68190.1 1236 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-396
PROTEIN_ID RID68190.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00365"
/db_xref="Phytozome:Brara.C00365"
intron_pos 29:0 (1/26)
intron_pos 59:2 (2/26)
intron_pos 124:0 (3/26)
intron_pos 155:2 (4/26)
intron_pos 215:2 (5/26)
intron_pos 255:2 (6/26)
intron_pos 322:2 (7/26)
intron_pos 354:0 (8/26)
intron_pos 378:1 (9/26)
intron_pos 414:0 (10/26)
intron_pos 466:1 (11/26)
intron_pos 551:1 (12/26)
intron_pos 576:0 (13/26)
intron_pos 608:0 (14/26)
intron_pos 640:0 (15/26)
intron_pos 685:2 (16/26)
intron_pos 764:0 (17/26)
intron_pos 819:0 (18/26)
intron_pos 850:0 (19/26)
intron_pos 899:0 (20/26)
intron_pos 936:0 (21/26)
intron_pos 996:0 (22/26)
intron_pos 1039:0 (23/26)
intron_pos 1072:0 (24/26)
intron_pos 1135:0 (25/26)
intron_pos 1191:2 (26/26)
BEGIN
1 MGEVAAQIPA SFGHELRARL RCRLVFDQIM DSGCENRHFF KIEEVPELII DVTTLNFNGS
61 SPTTATEEEN KTNSLYYSLP LLLAFPDSSI GETFSHLNLR RYFSHYVLLR PLRSIHFCWS
121 ILLSCCAVMA ILEKDLMFLI LQFLDEKKHK ELVHRLESES ACYFNMRYFE ELVAQGKWDE
181 MEKYLFGFTK IGDNQQSMMI FFEIRKHKYL EALDKRDHAK ALDILRKDLK VFELETYNKD
241 LFKEMSLLLT MDDFSLYRLS IHIVTSTFRA NPKISTYGDT TSERGNLFRG LEKLIVANPL
301 LRDKLQFPVL GTSRLRTLIG QSLKWQHHLC KNPMPNPDID TLFVDHTCDQ PIAIFKPVPS
361 ARISPALSEW TDTYASSAAI LMGPQTPFGH MGYQTADSNN PLKRSRPSGT SQEVGNISPV
421 PYSGQPHGRN TISLDEFPKV VVTTLAQGSP VTSMDFHPFQ QILLLVGTIG GDVFLWDVVA
481 RQMISEKGFE VWKLYACSDE LQVYLSLFGY FLTFQEELLL TLLIRGQASF NDDERASVNH
541 VAWSPDGSLI GVAYSKNIVH IYSFDGGNDI RNHLEIEAHT GSVNHLAFSY PNEQLSVVTC
601 GDDRLIKVWD AFTGARRFTF EGHEAPVLSV CPDQKKIIQI VQVILSTATD GKIKGWSYDD
661 VGASVTYDAP GHSSTRMAFS SDRARLFSCG TNKEGESFLV EWKDGKGSIK RTYQGLGQRA
721 VGIVQFDTTK NRFLAAGDES TIKIWDMNNT NLLKTIHADG GLPQLITCGN LQASPCVRFN
781 KEGTLLAVST SNHGVRILAT DDGLKFLKTA ENRTLVTKVP GGGGGGFGSS SANAGITMAD
841 QSTSFAAMKK NEVRTLPLGK PRTSNVSNEG STTWKVTEIT EPSQCYSLIL PDKVTDTKVS
901 RLIYTNSGSG VLALASNAEH KLWKWQKSDP NLDGKATTNA HPVLWRPNSG IIMINKTSDT
961 NPEEAIPCLA LSKNDSYLVS ASGREISLFK MATFETAATY MSPPPAATFL AFLPSDYNII
1021 GIGFKDSSIR IYNLQTDEGK AILLNGHTKR ITGLAFSLAL NILVSSGADS QVCVWSMAGW
1081 EKRSSMYLNA PKGRSMPAVS DARVQFHQNE IHLLVVNETQ IAIYDAQKLD CLNTWFLREA
1141 TGRRITSGTY SGDSKSIFVS FEDGTVNVLT ASNLRLRCRI NPTAYLPANP SLRVLVIAAH
1201 PTGSDQFAVG LSNGHVCVVE PSESEGKWGT SPPGST
//