LOCUS RID68178.1 877 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-384
PROTEIN_ID RID68178.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00355"
/db_xref="Phytozome:Brara.C00355"
intron_pos 512:2 (1/10)
intron_pos 515:1 (2/10)
intron_pos 574:0 (3/10)
intron_pos 594:1 (4/10)
intron_pos 627:1 (5/10)
intron_pos 659:0 (6/10)
intron_pos 697:0 (7/10)
intron_pos 719:2 (8/10)
intron_pos 756:2 (9/10)
intron_pos 842:0 (10/10)
BEGIN
1 MSGVPKRSHE EGASSSAKYP HEDSGSSYPN KSTHPLPVTP PPPQAHHHHQ QQQPHLHSIP
61 HPHSHQPPLA SAAASAPSPG YDVESRTVKG PRSEPRDGGG ERRSPLHGVY RSPSLPVTGS
121 SSDPHLTHPP VTLEARDGAK VESRDNRSDG REREIHGEGK REIHGPKGER DAKFESNPGS
181 YSRSDGRGIY GETKREVQGP KSDRDAKPER LGDDFSGKGH TRENQSYNDQ KGEVKMEKEG
241 HAHLPWKEQK DYHRGKRAEG STANVEPWVV SRGNNPQGST EVGVKDLSAP VEGAHLEGLG
301 ENKVDAKGED RFKDKDKKRK DLKHREWGDR DKDRSERRGS VPFGSVTSEP REIGRETEKW
361 ERERMEQNDR ERNKEKEKEK DHVKREPRTG GTEKEASQNE KELGEASSKP AEQEHVAPEQ
421 KKLNEPEGDE RESKDKRRER EGDSEAERAE KRSRVGEKEP EDGCLEGEGA AERDKDAFNC
481 GVQQRKRMLR PRGSPQTTNR DRVRSRSQDN EGVQGKPEVP VVVYKVGECM QELIKLWKEY
541 ESSHPDKSGD FASNGPTLEV RIPAEHVTAT NRQVRGGQLW GTDIYTDDSD LVAVLMHTGY
601 CRPTASPPPP TMQELRATIR VLPSQEYYTS KLRNNVRSRA WGAGIGCSYR VERCYILKKG
661 GGTIELEPSL THSSTVEPTL APMAVERSMT TRAAASNALR QQRFVREVTI QYNLCNEPWI
721 KYSISIVADK GLKKPLFTSA RLKKGEVLYL ETHSCRYELC FAGEKTMKAF QASQQQHSSQ
781 EATEIDNNNN NKSQNHLPSN GDKTESDNSI IDVFRWSRCK KPLPQKLMRS IGFPLPPDHV
841 EVLEENLDWE DVQWSQTGVW IAGKEYTLAR VHFLAPN
//