LOCUS RID68131.1 1496 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-337
PROTEIN_ID RID68131.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00313"
/db_xref="Phytozome:Brara.C00313"
intron_pos 25:1 (1/16)
intron_pos 260:0 (2/16)
intron_pos 334:0 (3/16)
intron_pos 1121:2 (4/16)
intron_pos 1160:0 (5/16)
intron_pos 1184:0 (6/16)
intron_pos 1217:0 (7/16)
intron_pos 1231:0 (8/16)
intron_pos 1258:0 (9/16)
intron_pos 1275:0 (10/16)
intron_pos 1302:1 (11/16)
intron_pos 1334:0 (12/16)
intron_pos 1358:0 (13/16)
intron_pos 1397:0 (14/16)
intron_pos 1420:0 (15/16)
intron_pos 1442:1 (16/16)
BEGIN
1 MALFRRFFYK KPPDHLLEIS ERLYVFDCCF SSDVMGEDEY KLYLGGIVAQ LQDHFPDASF
61 MVFNFREGDQ RSQISDVLSQ YDMTVMDYPR HYESCPLLPL EMIHHFLKSS ESWLSLEGQQ
121 NVLLMHCERG GWPVLAFMLS GLLLYRKQYQ GEVKTLEMVH KQAPKELLHL LSPLNPQPSQ
181 LRYLQYISRR DLGSDWPPSD TPLLLDCLIL RDLPRFEGRE GCRPIVRVYG QDPKARANRS
241 SVVLFSTPKT KKHTRLYQQE ECILVKLDIQ CRVQGDVVLE CIHLHDDLVR EDIIFRIMFH
301 TAFVRANILI VQREEMDILW DAKDQFPKEF KAEVLFSGAD SVVPIIATAP VSDDDENDFD
361 MASPDEFYEV EEIFSDAVDG HELKRGDSDG FVVVDSASDD SEGKEVWKGD VEPSAFLDCA
421 SDDSNHKHEA SADPVKDITV DDVQYRSDGT SVDSVKDIGI DDGDEQRKRR TMEAKENDSR
481 TVETQHKGDG EGNGLDPTTQ KTDTISEKAQ AKPRKQVGAN AKLAGDALKP KSNVRMAKPN
541 AVSRWIPSNK GSYKDSMHVA YPHTRINSAP ASITTSLKDG KRATSPDGVV TKEAKSKNLR
601 ASVSSPDVRS RAPSCLSPEF SPKEKPPSLP ASPHYAPPPP QHSHAPPEQP SLTSEAASPP
661 PPTYSSPSQN DSYSQTSQIP PPPPPPPFAS KRPNSGSMLP PPPPPPPLAS VKPKTGTVLP
721 PLPLSPPWKS VFASALATPT TCSTSQPHPP PQTSSHSQAS QLPLPPPPPP PPPFASVRRN
781 SETMLPPPLP PPPWKSVYTS TLETHEGSTS YNFPPPPPPP PPLPPFSSSN TPKENGDHVT
841 PSSLPYLSNA PSPSPKSSHI NGFSAPPPPF SKPHSVPPLP PPSYGSPTPP PPQPPPPPPP
901 PPFGKTSPPP PPPPPPFGSS GPQAPPPPPP FGSSCPPPPP PPPFRSGGPP PPPMGAPPPP
961 PPPMHRGAPP PPPPPMRGGA PPPPPPPMRG GAPPPPLPPM LGGAPPPPPP PMRGGAPPPP
1021 PPPGGRAPGG PPPPPPPGGR APGPPPPPGP RPPGGGPPPP PGPRPPGPPD LKGAGRGRGL
1081 SRPGLGSSAQ KKSSLKPLHW VKVTRALQGS LWDELQRQGQ TAPEFDVSEI ETLFSAIVPK
1141 PVDKSRKKSV GAKPEKIQLI DLRRANNTEI MLTKVKMPLP DMMAAVLAMD DTVLDSDQIE
1201 NLIKFCPTKE EMELLKNYTG DKAVLGKCEQ YFLELMKVPR VESKMRVFSF KIQFGTQITE
1261 FKKSLTAVNS ACEEVRTSPK LKEIMKKILY LGNTLNQGTA RGAAVGFKLD SLSKLSDTRA
1321 ANSKMTLMHY LCKVLAYQGS DLLDFPKDLE SLESASKIQL KSLAEEMQAI IKGLEKLNQE
1381 LNASESDGPV SEVFRKTLKD FISVATTETA AVTSLYSVVG NNADALAHYF GEDPKRCPFE
1441 QVTATLLNFI RLFKKAHEEN IKQEEMEKKK AAKEAEMEKE KAKGINLTKT ADDDDS
//