LOCUS RID68073.1 1114 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-278
PROTEIN_ID RID68073.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00256"
/db_xref="Phytozome:Brara.C00256"
intron_pos 11:0 (1/31)
intron_pos 33:1 (2/31)
intron_pos 83:2 (3/31)
intron_pos 136:1 (4/31)
intron_pos 225:0 (5/31)
intron_pos 298:0 (6/31)
intron_pos 334:1 (7/31)
intron_pos 373:0 (8/31)
intron_pos 406:0 (9/31)
intron_pos 442:2 (10/31)
intron_pos 467:2 (11/31)
intron_pos 494:0 (12/31)
intron_pos 543:0 (13/31)
intron_pos 570:0 (14/31)
intron_pos 610:0 (15/31)
intron_pos 651:0 (16/31)
intron_pos 676:0 (17/31)
intron_pos 705:2 (18/31)
intron_pos 742:0 (19/31)
intron_pos 765:0 (20/31)
intron_pos 801:0 (21/31)
intron_pos 819:2 (22/31)
intron_pos 879:0 (23/31)
intron_pos 913:0 (24/31)
intron_pos 937:0 (25/31)
intron_pos 959:0 (26/31)
intron_pos 981:0 (27/31)
intron_pos 1009:0 (28/31)
intron_pos 1048:0 (29/31)
intron_pos 1073:0 (30/31)
intron_pos 1102:0 (31/31)
BEGIN
1 MTMMTPPPVD QEDEEMLVPH SDVVDGPAQP MEVSEAETAV STVENQPAEE PPTLKFTWTI
61 PNFSRQNTRK LYSDVFVVGG YKWRILIFPK GNNVDHLSMY LDVADAANLP YGWSRYAQFS
121 LAVVNQIHTR YTIRKETQHQ FNARESDWGF TSFMPLSELY DPGRGYLAND TVYVEAEVIV
181 RKVLDYWSYD SKKETGFVGL KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS
241 IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
301 VEGTIQQLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG
361 DNKYHAEGHG LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR DTMVKINDRY EFPLQLDLDR
421 EDGKYLSPDA DRSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDL
481 KRALDEQYGG EEELPQTNPG FNNPPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAEH
541 LRVRLKKEQE EKEDKRKYKA QAHLFTIIKV ARDQDLREQI GKDIYFDLVD HDKVRSFRIQ
601 KQTPFQQFKE EVAKEFGIPV QLQRFWIWAK RQNHTYRPNR PLTPQEELQP VGQIREASNK
661 ANTAELKLFL EVELLDERPI PPPEKSKEDI LLFFKLYDPE KPELRYVGRL MVKSSSKPMD
721 ITGKLNEMAG FAPDEDLELF EEIKFEPGVM CEHLDKKTSF RLCQIEDGDI ICFQKHLVKK
781 ETECRYPAVP LFLEYVQNRQ LVRFRALEKP KEDEFVLELS KLHTYDDVVE RVAQKLGLDD
841 PSKLRLTSHN CYSQQPKPQP IKYRGVDRLS DMLVHYNQTS DILYYEVLDI PLPELQGLKT
901 LKVAFHHATK EEVVIHNIRL PKQSTVGDVI DELKTKVELS HPDAELRLLE VFYHKIYKIF
961 PLTERIENIN DQYWTVRAEE IPEEEKNIGP NDRLILVYHF AKETGQNQQV QNFGEPFFLV
1021 IHEGETLEEI KNRIQKKLHV SDEDFAKWKF AFMSMGRPEY LQDSDVVYNR FQRRDVYGAF
1081 EQYLGLEHTD TTPKRAYSAN QNRHTYEKPV KIYN
//