LOCUS RID68072.1 1115 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-279
PROTEIN_ID RID68072.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00256"
/db_xref="Phytozome:Brara.C00256"
intron_pos 11:0 (1/31)
intron_pos 34:1 (2/31)
intron_pos 84:2 (3/31)
intron_pos 137:1 (4/31)
intron_pos 226:0 (5/31)
intron_pos 299:0 (6/31)
intron_pos 335:1 (7/31)
intron_pos 374:0 (8/31)
intron_pos 407:0 (9/31)
intron_pos 443:2 (10/31)
intron_pos 468:2 (11/31)
intron_pos 495:0 (12/31)
intron_pos 544:0 (13/31)
intron_pos 571:0 (14/31)
intron_pos 611:0 (15/31)
intron_pos 652:0 (16/31)
intron_pos 677:0 (17/31)
intron_pos 706:2 (18/31)
intron_pos 743:0 (19/31)
intron_pos 766:0 (20/31)
intron_pos 802:0 (21/31)
intron_pos 820:2 (22/31)
intron_pos 880:0 (23/31)
intron_pos 914:0 (24/31)
intron_pos 938:0 (25/31)
intron_pos 960:0 (26/31)
intron_pos 982:0 (27/31)
intron_pos 1010:0 (28/31)
intron_pos 1049:0 (29/31)
intron_pos 1074:0 (30/31)
intron_pos 1103:0 (31/31)
BEGIN
1 MTMMTPPPVD QQEDEEMLVP HSDVVDGPAQ PMEVSEAETA VSTVENQPAE EPPTLKFTWT
61 IPNFSRQNTR KLYSDVFVVG GYKWRILIFP KGNNVDHLSM YLDVADAANL PYGWSRYAQF
121 SLAVVNQIHT RYTIRKETQH QFNARESDWG FTSFMPLSEL YDPGRGYLAN DTVYVEAEVI
181 VRKVLDYWSY DSKKETGFVG LKNQGATCYM NSLLQTLYHI PYFRKAVYHM PTTENDAPTA
241 SIPLALQSLF YKLQYNDTSV ATKELTKSFG WDTYDSFMQH DVQELNRVLC EKLEDKMKGT
301 VVEGTIQQLF EGHHMNYIEC INVDYKSTRK ESFYDLQLDV KGCKDVYASF DKYVEVERLE
361 GDNKYHAEGH GLQDAKKGVL FIDFPPVLQL QLKRFEYDFM RDTMVKINDR YEFPLQLDLD
421 REDGKYLSPD ADRSVRNLYT LHSVLVHSGG VHGGHYYAFI RPTLSDQWYK FDDERVTKED
481 LKRALDEQYG GEEELPQTNP GFNNPPFKFT KYSNAYMLVY IRESDKDKII CNVDEKDIAE
541 HLRVRLKKEQ EEKEDKRKYK AQAHLFTIIK VARDQDLREQ IGKDIYFDLV DHDKVRSFRI
601 QKQTPFQQFK EEVAKEFGIP VQLQRFWIWA KRQNHTYRPN RPLTPQEELQ PVGQIREASN
661 KANTAELKLF LEVELLDERP IPPPEKSKED ILLFFKLYDP EKPELRYVGR LMVKSSSKPM
721 DITGKLNEMA GFAPDEDLEL FEEIKFEPGV MCEHLDKKTS FRLCQIEDGD IICFQKHLVK
781 KETECRYPAV PLFLEYVQNR QLVRFRALEK PKEDEFVLEL SKLHTYDDVV ERVAQKLGLD
841 DPSKLRLTSH NCYSQQPKPQ PIKYRGVDRL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
901 TLKVAFHHAT KEEVVIHNIR LPKQSTVGDV IDELKTKVEL SHPDAELRLL EVFYHKIYKI
961 FPLTERIENI NDQYWTVRAE EIPEEEKNIG PNDRLILVYH FAKETGQNQQ VQNFGEPFFL
1021 VIHEGETLEE IKNRIQKKLH VSDEDFAKWK FAFMSMGRPE YLQDSDVVYN RFQRRDVYGA
1081 FEQYLGLEHT DTTPKRAYSA NQNRHTYEKP VKIYN
//