LOCUS RID68056.1 887 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-262
PROTEIN_ID RID68056.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00241"
/db_xref="Phytozome:Brara.C00241"
intron_pos 14:2 (1/17)
intron_pos 167:0 (2/17)
intron_pos 197:2 (3/17)
intron_pos 252:2 (4/17)
intron_pos 384:0 (5/17)
intron_pos 423:2 (6/17)
intron_pos 448:0 (7/17)
intron_pos 523:2 (8/17)
intron_pos 538:2 (9/17)
intron_pos 563:0 (10/17)
intron_pos 627:0 (11/17)
intron_pos 661:2 (12/17)
intron_pos 682:0 (13/17)
intron_pos 732:0 (14/17)
intron_pos 774:0 (15/17)
intron_pos 831:0 (16/17)
intron_pos 851:0 (17/17)
BEGIN
1 MAVKLHRPGL IPSSSSNPCL SRMSIGTLIS CRRVVELDYT SNFSGNSSRR LFVTYDVLES
61 KKICWYRSQR RRMRPFLLAA SSDDGVAVNG TPQPRASDDV EEMRAKLTGS LQDEYNCDEL
121 IQSLHDAARS FELALKKKIS SSKLPWFSAA WLGVDRNAWV KTFSYQASVY SLLQAANDVS
181 SRGNNRDNDL NVFVQRSLSR LAAPLDSMMR DKLSSSHPEA NEWFWSDQVP PAVTSFVSCF
241 EGDQRFVAAT SAYAKGKSSA ASNETEVSLL MLVLNCIAAV TKLGPTKLSC PPFFSLIPDT
301 TGRLMDKFVD FVPLPQAYHS MKSLGLRREF LVHFGPRAAA CRVKSDCPTD EVVFWVDLIQ
361 NQLLRAIDRE KIWSRLTTSE SIEVLERDLA IFGFFIALGR STQSFLAANG FDALENPMED
421 LVRHFIGGSL LQYPQLSAIS SYQLYVEVVC EELEWLPFYP NKKDSQAAKQ AHGHKSRPEG
481 PPNYDALPQI LNVCSYWLQS FIKYSKWPEN PSNVKAAKFL STGHKKLIQC KEELGISSLA
541 VTEAGFVDMN ALSTEESSSF DKALESVDEA LVRLESLLQQ LHASSSSSGK EQIKAACSDL
601 EKIRKLKKEA EFLEASFRAK AASLQEGGGD SNSQVSSEEQ KQNLKGKDTK NSISSVDQGR
661 SRSRGFWGFF ERPPRKKPAP KVDEYTERSR ENVDSVDSES SEIYRFELLR NELIELEKRV
721 QGSTDESVEE EGKTSGDPTP KSSSSMKGAE LVQSSKKESV IEKTLDQIKE TSTDVWQGTQ
781 LLAFDSAAAM ELLRRSVIGD ELTEKEKKAL RRTITDLASV VPIGVLMLLP VTAVGHAAML
841 AAIQRYVPGL IPSTYGSERL NLLRQLEKVK QMQNETEPEE GIDEAES
//