LOCUS RID68029.1 777 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-235
PROTEIN_ID RID68029.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00215"
/db_xref="Phytozome:Brara.C00215"
intron_pos 19:0 (1/19)
intron_pos 43:0 (2/19)
intron_pos 67:0 (3/19)
intron_pos 98:1 (4/19)
intron_pos 123:0 (5/19)
intron_pos 140:0 (6/19)
intron_pos 166:0 (7/19)
intron_pos 206:2 (8/19)
intron_pos 260:1 (9/19)
intron_pos 286:0 (10/19)
intron_pos 324:0 (11/19)
intron_pos 358:0 (12/19)
intron_pos 405:0 (13/19)
intron_pos 463:0 (14/19)
intron_pos 484:1 (15/19)
intron_pos 531:0 (16/19)
intron_pos 583:2 (17/19)
intron_pos 610:0 (18/19)
intron_pos 643:0 (19/19)
BEGIN
1 MLGLAASYRR TMQPEIAKAL FFHVPARYQA SYAEFEIPTL LQSAALVSVG ILFEGSAHQQ
61 TMQLLLGEIG RRSAGDNILE REGYAVSAGF SLGLVALGRG GDALGSLDPF VNRLLQYLGA
121 KEGRSLLAPS NEDHRSAAQI TDGSTSNVDI TAPGAIIALA LMYLKTESEV IFSKLYIPQT
181 HYELECVRPD FIMLRVIARN LIMWSRIRPT CEWIESQVPE VVKNGISHLQ DDMDDMYEMD
241 VEALVQAYVN IVAGACISLG LRFAGTRDGN ARDLLYNYAL YLLNEIKPVS ATSGTAFPRG
301 ISKFVDKGTL EMCLYLVILS LSVVMAGSGD LQIFRLLRFL RSRNSADGHA NYGTQMAVSL
361 ATGFLFLGGG MRTFSTSNGS IAMLLITLYP RLPSGPNDNR CHLQAFRHLY VLATEARWLQ
421 TIDVDSGLPV YAPLEVTVKE TELYSETRFC EVTPCILPER AILKRICVCG PRYWPQQVEL
481 VPEEKHWWSF GDKSDPFSSG VIHVKRKVGA CSYVDDPVGC QSLLSRAMHK VFGLRTLGES
541 NTLANSHREL DSDSVDHLVS TFSSDPSLIA FAQLCCDKTW NDRSDSDFKE FCLQVLFDCI
601 SKDRPALLQV YLSLYTTIAS MADLLVKTDS NVCDSLSISS LKVALAYNEA VTSGRLASSG
661 GFVQSIFLAS LGKRCEEILN CSTELKINLR NYLTSEAWSD DHNSKLQKDT ILLSWYLKWF
721 SVPSPSIIRA AVEKIKSKFN ISTSAVPLLR LLLPSTHISA ISEIDRVFFP SNVTIAL
//