LOCUS RID67863.1 1917 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-69
PROTEIN_ID RID67863.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00065"
/db_xref="Phytozome:Brara.C00065"
intron_pos 14:0 (1/16)
intron_pos 378:0 (2/16)
intron_pos 734:2 (3/16)
intron_pos 781:2 (4/16)
intron_pos 863:0 (5/16)
intron_pos 1097:0 (6/16)
intron_pos 1162:0 (7/16)
intron_pos 1351:2 (8/16)
intron_pos 1369:0 (9/16)
intron_pos 1575:1 (10/16)
intron_pos 1629:0 (11/16)
intron_pos 1801:2 (12/16)
intron_pos 1836:2 (13/16)
intron_pos 1859:0 (14/16)
intron_pos 1885:0 (15/16)
intron_pos 1908:0 (16/16)
BEGIN
1 METDSRANNS LLKRLASFGV PKKCCSKRGL VEFIRANRSR TSEIVSALLP TDEDVKFGLK
61 GTRERSRLSA VSPTMKKRFR ESISWLQWLM FHDEPGVSLK NLAKLNVDQR GVCGSVWGEN
121 DIAYRCRTCE SDSTCAICVA CFENGDHSSH DYSITYTSGG CCDCGDDTAW KQEGFCSNHK
181 GSEQIQPLSE NLAESVGPVL DALFACWNSK LLSAEGIRNK DALAVRQKMS NEMTFAVVEM
241 LLGFYKSSES LLSFVSRRIV ASGGLLILLV KAERFLDQDV MKKLHDLFLK LIGDPVFKSE
301 FAKALVSYYP LVVSGAVKKG EDPNFMKYPI LPLFSVQFFT VPTLATVLVN EMNLLAMLLG
361 CLSDIFLSCC GEDGVLQATK WVRLCDTSDR VIADLKYVMS HAVVSKYATH EHLELSRSWL
421 KLLTFVQGMD PLKRETGIHI EEENENVHLF CDLSHSIAGI HSLLVNGAYS PACDEQLEIE
481 RTTKATLNNC DGDGERYAKV GKLSHEDSVC TAMISSSFFD SSMASEVYGV DAFHALIPSS
541 AIWLIRECLK VLETCLGNDE GISKFLCKLV SPSGRSVSSG HASSSREPST EVQADVRTDC
601 RRVSRNSSDP TENASGVHIL GLCDWSDIHY DVSFQAISVH LPLHRLLSLL IGKALRMCYG
661 ESTLHHGVNV SLEIPQADFF SYVLGDFHPC GFSALVMEHV LRVRVFCAQV IAGMWKKNGD
721 TPLVSCEWYR SVRRSEQGLE LDIFLLQCCG ALAPADSYVN KLLTRFGLSS YLSLNPDITN
781 EYEPVLVQEM LALLIQILQE RRFCGLSTAE SLRREIICKL ATGDFTRSQL VKSLPRDLSK
841 SDELQEVLDN VSDYCNPSGM NQGKYSLRSS CWKDLDLYHP RLHSGELQSA EERFLRYCGA
901 SALTTQLPRW RMIYPPLKGL SRIGTCKATF QIISSALYYA LQGGSSVKSR APDGVLIAAL
961 HLLSLSLDIC TQQRESNIQA CCVEDSIPIL ELAGVEIMGI NKRTGNESLL SLLVSLMRTR
1021 KDDGLHQFPE AGSCNISSWI AKLLKKFSAI DSVSMKLLQS LAPEVVGQSG FDKVTSGAAS
1081 DAKRKAKARE RQAAILAKMK AEQTKFLSTL SSSMDDDDPR SETETSDSVM EQDSEIAVRE
1141 VCSLCHDSDS KDPVSFLIFL QKSKLLSFVD RGPPSWDQRS QSEKNRSVDG VRVVLRRNFS
1201 SDSLMIPHDA TSEPATDSVF EALTTRLIRN GQTEKRSSDG SGKDESNMES MEIAMYQTVR
1261 RKIDNIINQS LAHVDQRPLA AESSSERNPV GGIPTLQVRV RDIRSRQTSR HSDVSSDGFH
1321 PTDCDGVYLS SCGHAVHQSC LERYLKSLME RSDRRNVFEG AHIVDLKQGE FLCPACRGLA
1381 NSVLPACPGD LCSVSSIQES SHDMLGKSDA QMPSLWLSEA LCLLRSVADE IEDGDGVSTV
1441 SLVGDESIRK DLESVSNKLW NFYFSKRQEN FPGGHWLSQS IVMWDTLKYS LISMEIVTRC
1501 AKSSVLPVYC IDSLYEELNT SKGTALSLLL RVVQSTRTKN TLHVCQRFVG LKHLAESICS
1561 GISNSPSSSI FGTEGSNLLW NRSSDPVLFH DPFSSLMWAL FCLPSPFITC KESLLSLVHI
1621 FYSVSLVQTV IGYCAGRMFD LSNLDNLLSD ISIALRESGG WEYFRSNNMD LSCDIKETIR
1681 KYSLPFLRRC ALLWRLLKTT TSGKLHEEVD KFDESTSDNM DFMHSPQSEL NHVNELEKMF
1741 KIPPIDTILS DELLRSSTQT WLGHFQKEYK VYRVKEPLCI TPVVPFQLMK LPNLYQDLLQ
1801 RYIKKPCSNC KTVMEEPALC LLCGRLCSPI KPPCCRESGC QTHAVTCGAG TGVFLLIRRT
1861 KILLQRFGRQ SSWPSLYLDT FGEEDTNMFR GKRLYLNEER YAALTYMVGS HGLDHSS
//