LOCUS RID67816.1 1086 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-21
PROTEIN_ID RID67816.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00020"
/db_xref="Phytozome:Brara.C00020"
intron_pos 49:1 (1/18)
intron_pos 96:1 (2/18)
intron_pos 413:1 (3/18)
intron_pos 455:0 (4/18)
intron_pos 506:2 (5/18)
intron_pos 547:2 (6/18)
intron_pos 609:2 (7/18)
intron_pos 637:0 (8/18)
intron_pos 654:0 (9/18)
intron_pos 681:1 (10/18)
intron_pos 718:2 (11/18)
intron_pos 742:2 (12/18)
intron_pos 809:0 (13/18)
intron_pos 870:0 (14/18)
intron_pos 917:2 (15/18)
intron_pos 938:2 (16/18)
intron_pos 1009:0 (17/18)
intron_pos 1067:0 (18/18)
BEGIN
1 MSTWSLLPDS SGDCFRWEVA GRILQSDSED YAIESTAPLP SMNDLLLQDL HNIGGSSLQV
61 DSAATLPMFR TASGRSVPLK DSSIAKALSI LGTHSDNVPL RESGFGDPNS FFQTASNKKV
121 FVSSAGLSRA NALLGLEADD FNGFNHVKRS NSSHQKRGCS ELKTHATGVQ HHSEIPGQYE
181 CHVFEKISDN LYTSAVVPPT MFQTAGGKTL SVSVQALKRA RNLLGDPESG TLFDDVAAGD
241 QFATPQKVQR LGDTAIKNRN ANTGYNAYEG KTSNKHTATS FVSPLRSSSK QFRSAKLEDL
301 ASGGNLIKKF DAAVDETDCA LNTTKVATHG VSYNRPLASN MAVNNAKANG FIPIAKQFGQ
361 PLVDITNRSA NNKQDSTQKK RLGKTISVSP FKRPRNSSFK TPLKKNAQHA LSGLSIVSSD
421 TLNSKKVLST RYPERSPRVY IKDYFRMHPT VTTKMNYVPD HVRRIKSSNA DKYVFRDESS
481 SNMVGAETFF QILAESGASL QQASRKWIIN HYRWIVWKLA CYETCYPLIC RGNFLTITNV
541 LEELKYRYER EVNHGHCSAI KKILSGDAPA SSMMVLYISA IYPKTDNDSQ EALGSGSGSN
601 VKVELSDGWY SMNAALDVSL TKQLNAGKLF VGQKLRILGA GLSGWATPTS PLEAVISNTI
661 CLLLNINGTY RAHWADRLGF CKEVGVPLAF NCIKGNGGPV PKTLAGITRI YPILYKERLG
721 ERKSIIRSER MESRMTELHN QRRSALVEGL MCEYERGVNG VHSQNDTDSE EGAKVFKLLE
781 TASEPELLMA EMSLEQLTSF TTYKSKFEAA KQIQMEKSVA KALEEAGLSE RDVTPFMRIR
841 LVGLTSLSYE GEHNPKEGIV TIWNPTERQR TELTEGKIYI VKALVPTISD SETLYLHARG
901 SSSRWEPLSP KASSSFQPFF NPRKPISLSN FGGIPLSSEF DIAAYVVYVG NVYTDVEQKK
961 QWVFVTDGST QRSRSGEISN SLLAISFSTP SMDDLPTPHI SHSLVGSVVG FCNLIKRAKD
1021 AKNDMWVGEA TENSVYSINA EAAYSSHLKT SSSHIQTWAK LSSSNSVTYK LRQRVLFIIG
1081 ASTCSR
//