LOCUS RID67798.1 849 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4
PROTEIN_ID RID67798.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00004"
/db_xref="Phytozome:Brara.C00004"
intron_pos 38:1 (1/15)
intron_pos 88:2 (2/15)
intron_pos 112:2 (3/15)
intron_pos 160:2 (4/15)
intron_pos 184:2 (5/15)
intron_pos 208:2 (6/15)
intron_pos 233:2 (7/15)
intron_pos 256:2 (8/15)
intron_pos 280:2 (9/15)
intron_pos 312:2 (10/15)
intron_pos 480:1 (11/15)
intron_pos 533:1 (12/15)
intron_pos 628:0 (13/15)
intron_pos 645:1 (14/15)
intron_pos 701:0 (15/15)
BEGIN
1 MVLLPQRVSL YPLLVAFFCL LLLLLLLADA QRTDPSEVTA LRSLKRSLVD PKDFLRNWNR
61 GDPCRSNWTG VICSNEIGPD EYLHVRELLV MNMNLSGSLS PELRKLVHLE ILLLNGNKLS
121 GPLPSELGYL SNLNRFQIDE NNITGPIPKS FSNLRKVKHL HFNNNSLSGQ IPVELSSLTN
181 IFHVLLDNNN LSGDLPPQLS QLPNLQILQL DNNNFSGSDI PASYGNFSSI LKLDLSWNEL
241 TGPIPSTNLS EDVTTIDLSN NILNGSIPLS FSNLPLLQML DLRNNSLSHV EGDLTLPENV
301 TLRCPVVSRI AWLDGNPICK NGSITNAGLF CESIGKAWTS PPPINSTDCP PLACPTPDFY
361 EYSPASPLRC FCAAPLRIGY RLKSPSFSYF PPYIDQFGEY VTDFLQMEPY QLWIDSYQWE
421 KGPRLRMHLK LFPQVTRSTF NTSEVVRIRG IFASWRFPGS DLFGPYELLN FTLQGPYSYV
481 NLGSERKGVS WGRLAAITAG AVVTAVAISA MVAALLLRRY SKHEREISRR RSSSKASLMN
541 SGIRGFRFKE LAEATDDFSS SALVGRGGYG KVYRGVLSDK TVAAIKRADE GSLQGEKEFL
601 NEIELLSRLH HRNLVSLIGY CDEEGEQMLV YEFMPNGTLR DWLSEANPPV FHRDIKASNI
661 LLDLNFNAKV ADFGLSRLAP ALEEEEDVPK HVSTVVRGTP GYLDPEYFLT HKLTDKSDVY
721 SIGVVFLELL TGMHAISHGK NIVREVKTAD MMVSLIDKRM EAWSMETAER FFSLALRCSH
781 DSPDMRPAMA EVVKELEALL PDKEGKMETK SSSSVLSTSS SNVTRDLYES ASLLGSDLSS
841 GVVPSIAPR
//