LOCUS RID67797.1 948 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3
PROTEIN_ID RID67797.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C00003"
/db_xref="Phytozome:Brara.C00003"
intron_pos 30:1 (1/18)
intron_pos 79:2 (2/18)
intron_pos 103:2 (3/18)
intron_pos 127:2 (4/18)
intron_pos 175:2 (5/18)
intron_pos 199:2 (6/18)
intron_pos 223:2 (7/18)
intron_pos 248:2 (8/18)
intron_pos 271:2 (9/18)
intron_pos 294:2 (10/18)
intron_pos 318:2 (11/18)
intron_pos 346:2 (12/18)
intron_pos 369:2 (13/18)
intron_pos 543:1 (14/18)
intron_pos 598:1 (15/18)
intron_pos 693:0 (16/18)
intron_pos 710:1 (17/18)
intron_pos 793:0 (18/18)
BEGIN
1 MSSVGLVLLV LSSCCLSLLD SQQITHPLDV SALHAVRRKL KDPMNHLQDW KKTDPCASNW
61 TGVFCIADPS DGYLHVKELR LLNLNLTGTL APELSHLANL TILNFMWNNL TGQVPPEVGN
121 LTHLIFLLLS GNQLTGTLPQ ELGSLSNLLI LQIDYNGISG DLPTSLANLK KLKHFHMNNN
181 SITGQIPPEY SSLSDVLHFL MDNNKLTGYL PPELSQMASL KIIQLDNNNF VGTEIPSSYG
241 KIPNLVKLSL RNCNLEGPVP DMSRSPVLYY LDLSSNKLTG EIPNKRFSGN ITTINLYNNM
301 LNGSIPSNFS GLARLQRLSL KNNNLSGEIP VIWEKISFTA EAKLILDLRY NLFTNVSNVL
361 NPPSNVTVKL YGNPVCARVN EPNIADLCGV STAVDVVESP GSSSDNSSST GECKRQSCPV
421 SENYEYVIGS PVPCFCAAPI GIGLRLRSPS FSDFRPYTVA YMLDVASNLG INLYQLSIES
481 FSWQSGPRLA INMKVFPDLN SKFNSTELPR IVDFFATFSL DTDDSLGPYE IIYINLLGPY
541 KDVTLNLYPS KSGMSKGVKI GIIVGGTIAF FLGLSFLALL LFFIKRKAKH VQQQQEPIPK
601 SPMNMESVKG YNFMELDTAT SSFSDLSQIG RGGYGKVYRG HLPCGLIVAV KRAEQGSLQG
661 QKEFYTEIEL LSRLHHRNLV SLLGYCDQKG EQMLVYEFMP NGSLQDALSA RFREPLSFGL
721 RLRIALGSAR GILYLHTEAD PPIIHRDIKP SNILLDNKMN PKVADFGISK LIALDGGGVQ
781 RDHVTTIVKG TPGYVDPEYY LSHRLTEKSD VYSMGIVFLE ILTGMRPISH GRNIVREVKE
841 AWEAGMMLSV IDESMGQDYS EEGVKRFMEL AIRCCREDPV ERPGMLEIVR ELENLFTKEE
901 KPYSSPSVQS SASGFFAAGL GSYNNHSAFS QFTANELVSG VIPSIAPR
//