LOCUS CDQ50802.1 1120 aa PRT BCT 04-FEB-2016
DEFINITION Vibrio anguillarum Putative transcriptional regulator
HTH, AraC/XylS family protein protein.
ACCESSION LK021130-1884
PROTEIN_ID CDQ50802.1
SOURCE Vibrio anguillarum
ORGANISM Vibrio anguillarum
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
Vibrionaceae; Vibrio.
REFERENCE 1 (bases 1 to 3119695)
AUTHORS Holm K.
JOURNAL Submitted (26-MAR-2014) to the INSDC. Norstruct, Dept of Chemistry,
University of Tromso, Science Park 3, NO-9037 Tromso, NORWAY.
REFERENCE 2
AUTHORS Holm K.O., Nilsson K., Hjerde E., Willassen N.P., Milton D.L.
TITLE Complete genome sequence of Vibrio anguillarum strain NB10, a
virulent isolate from the Gulf of Bothnia
JOURNAL Stand Genomic Sci 10, 60-60(2015).
PUBMED 26380645
FEATURES Qualifiers
source /organism="Vibrio anguillarum"
/chromosome="1"
/host="Rainbow trout"
/strain="NB10"
/mol_type="genomic DNA"
/geo_loc_name="Sweden:Baltic Sea, Norrbyn Umeaa"
/isolation_source="clinical isolate, Rainbow trout"
/serovar="O1"
/db_xref="taxon:55601"
protein /transl_table=11
/locus_tag="VANGNB10_cI1890c"
/old_locus_tag="TVA0803"
/note="user locus_tag: VANGcI1890c"
/note="Similar to Vibrio parahaemolyticus subname:
full=putative transcriptional regulator, arac/xyls family
UniProt:Q87RE3 (EMBL:BA000031) (1130 aa) fasta scores:
E()=7.2e-114, 40.2% id in 736 aa; CDS contains a framshift
after codon 356=stopcodon; CDS seem to be truncated at the
C-terminus (around/before codon 350)"
BEGIN
1 MKGKNDYFKP LLWILGFLTL LLAQGTQALD KAPSIFYPLP AQAQGKIFAA QNLFLGEEGG
61 IWIHDVHGKV VFFDGQNILP RRGSVLSQES ENITYLNNAF WTFIDNELYR TYPAQDRELV
121 FSLTPGIIIK KIGSSGNFIW LADETHFYTY HAQTHKLVTY SFKEMYQLNQ ASRLIVNDAK
181 FVLSKWVLAT NAGVYLSDGE SFSHVLSSGK NFIEKLYFSE KRRELVIGTL NGGLIIDVED
241 PKRQQKLVGD SHVLSVAETD QEYWIGTEDG LFVHSFLTGK TVKLESNDQD NNGLPGNKIY
301 SLVNDLQGGI WIATDKGIRY FSLFGQKFKR HSIAQLNNNP ITKIVTRSDN KGYFFLTRQG
361 LYQVDAEDWQ EPKLIFPGEV HDVAQIDDHS LWIATHTGIV IYHLQTKKMI ETSVLPLKLR
421 SNDTKHLEFD HEGLLWGATG NHLWSYQLAD NSLTDFGSEW FVDAFLPAKI IKLKSTRRGV
481 FIGTDHGVYL FDKGKIVFLR ATSHYGQSID IFESSKGDVW FASAYGVFVL AHDRSDIRSI
541 DMVEENISPK CLTETGNGIW LTSSQGISLY NPMGEMVKHF GDPHGLMNNE FKSGVCESSI
601 INNQQQLLLG SRFGLVTAWS SELTVATPPN TNIIFSQVNV DHIPVMFGRG RFQTLELEYG
661 SSISFLFGAL PESRALSLEY RIAGDKEWQR LESAQLTLDH LLPGHYRLLV RNYSPNPQNS
721 MINSLSFVVD NPWYWSSWAI VLYLCLSIGL IAFASWWRSR WVTKVNRKLK AQVALKTDQL
781 RHQSKIVLTN NQQLRKQLQI RHIVVEQMLD SITPTLNQLI YRSQLHQLAR LESLALKVKR
841 ELALLRNVRN DKTATQLLYD LSIILNSCVD GWREEFAKAN ISLAVNNELK QAYIESAHFN
901 LDIIFNTLLS DAVKRLYRNQ ELQIHCYERE KRLFIVMIDC GDQVQSINSD KRISGFELEE
961 MQLLVQRSGG EIHIFSSPER NLVELSWPSV ELVSDAPEMI VVEEHSEDKF IDVTEKEWLK
1021 KVEKLVHNHY SDPEFSTSSA AKSLFVSERS LQRRFKAITN KTFKEYLNEI RLEKACQYLL
1081 AGGKVAQVAF DCGFNDPSYF SQRFKHHFGL SPTQFVDDNE
//