LOCUS CAN74596.1 298 aa PRT PLN 05-FEB-2008
DEFINITION Vitis vinifera hypothetical protein protein.
ACCESSION AM459880-3
PROTEIN_ID CAN74596.1
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 31685)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Qualifiers
source /organism="Vitis vinifera"
/chromosome="6"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
protein /locus_tag="VITISV_003478"
/db_xref="GOA:A5BHQ4"
/db_xref="InterPro:IPR004114"
/db_xref="InterPro:IPR040183"
/db_xref="UniProtKB/TrEMBL:A5BHQ4"
/experiment="confirmed by EST"
intron_pos 33:0 (1/5)
intron_pos 72:0 (2/5)
intron_pos 95:1 (3/5)
intron_pos 226:0 (4/5)
intron_pos 273:0 (5/5)
BEGIN
1 MGVYSYTRRD ERRCIVIDEE EASLGGLEAK GNKPVKKGGY PLHPGVQGFF ITCDGGRERQ
61 ASREALNVID SIRGVYERFQ STQAMAWFNP KRWFGSDDDD XDIDDEEDKS DLHREKDAND
121 ENPSNEKSHP QKNDDVCREN QNKEKADDKT QDGNENQEND ADGEKADKNT EDGNENQEVD
181 AEEPSAKKQC LETDASTHII HEKTEEKSID KLIEAELQEL GDRNKFAVLY EARSNTGIDR
241 MKIINSVAKS VPGPHKVDLS NPDMTIVVQI VKTVCLIGFL EKYKELAKYN LRQLTSPK
//