LOCUS CAN67941.1 1033 aa PRT PLN 05-FEB-2008
DEFINITION Vitis vinifera hypothetical protein protein.
ACCESSION AM459812-1
PROTEIN_ID CAN67941.1
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 10885)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Qualifiers
source /organism="Vitis vinifera"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
protein /locus_tag="VITISV_033155"
/note="GO:0008270 GO:0046872 GO:0003677 GO:0003676
GO:0016787 GO:0015074"
/note="weakly similar to EMBL:AP008207"
/db_xref="InterPro:IPR012337"
/db_xref="InterPro:IPR013103"
/db_xref="InterPro:IPR025724"
/db_xref="InterPro:IPR039537"
/db_xref="UniProtKB/TrEMBL:A5BHM4"
/inference="similar to DNA sequence:EMBL:AP008207"
intron_pos 118:2 (1/6)
intron_pos 222:1 (2/6)
intron_pos 277:1 (3/6)
intron_pos 430:0 (4/6)
intron_pos 486:1 (5/6)
intron_pos 776:1 (6/6)
BEGIN
1 MKNNNATIEI LSGSNYKRWR SDIEFVLGMM DLDMALREDE PPKLTNKSTE AMRAHYAKWE
61 RSNRLSLISI KRSIAEYLLG RILESNNAKE FLVTVANRYQ TSDNAEAGHF MDELMNMSVN
121 DLITKCVAEE EKLKRENNES AHLVALGKLN NKKRVENARK SNFHSHKKNK NFKKSGSEMQ
181 KNGNGNANNT DLKCYHYNKK GHKRVDCFKF KNWLEKKKKE QDSWWLDSGA TVHVATSLQG
241 IRNLRKPSEK ESNLKVGNDI EIDVEHIGIT VLELDYVLDK TGYSFAFANK RIDVIYDSKV
301 IGNCVLFDGL YRLSLLSTCS YNVENNVAKR PLTKERYSLL WHKRLGHISK EQVERLISSG
361 ILPRFDSDDL EICVDCVKGK LTKNKKKGAT HSQNLLEIVH TDISGPYSTT LCGNKYFITF
421 IDDFSRYGYV KIYDHSLKKT DSRTTRCYFI GYPSHSKVYK FYCSTCGTRV VESQVAKFLE
481 LDVVDTRSCY CQFPHCRNKP IVDEIPPVEI RRSQRTRRPV LSNDYYVYLG EGECDIREEV
541 DLTTYCEALS SDKANEWLIA MRDEMQSMSD NDVWELVDLP KGYKPIGCKW VFKTKRDNKG
601 NVERYKARLV AKGYTQRKDI DFTETFSPVS TKDSFRLVMA LVAHFELELH QTDVKTTFLN
661 DDLSEEVYMS QPEGFKENGK ENMVCRLKRS IYGIKQASRQ WYLKFDKIVM SFGFIENKFD
721 QCVYMKVNGS KYIFMVLYIN DILLASSDVN LLNDTKRILS TNFNMKDLGE AFFVLAGDVP
781 VVKGDKLSNE QCPKNDLEKD AIKSIPYASD ISSLMYAQVC TRPDIAFIVN VLGRYLSNPG
841 HDHWVAAKKV MRYLQRTKDF MLVYRRVDNL EVVGYSDSDF GGCSDDRKST SRYILMLAGG
901 AISWKSVKQS LIASSTIYAK FVACYGASSQ AVWLRNLILE LQVVDSIFRS IVIYCDNNAV
961 VSYSKNNKIS TGSKHMEIKY LTVKDLVKKG DIVIKDKRTE SMLADPLTKG LKPIMFKEHV
1021 VNMGVIKSFD SLV
//