LOCUS BEK93019.1 5244 aa PRT BCT 26-JUL-2023
DEFINITION Nocardia seriolae hypothetical protein protein.
ACCESSION AP028459-925
PROTEIN_ID BEK93019.1
SOURCE Nocardia seriolae
ORGANISM Nocardia seriolae
Bacteria; Bacillati; Actinomycetota; Actinomycetes;
Mycobacteriales; Nocardiaceae; Nocardia.
REFERENCE 1 (bases 1 to 8113213)
AUTHORS Umeda,K., Matsuura,Y., Shimahara,Y., Takano,T. and Matsuyama,T.
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2023) to the DDBJ/EMBL/GenBank databases.
Contact:Kousuke Umeda
Fisheries Technology Institute, Japan Fisheries Research and
Education Agency, Aquaculture Research Department; 422-1
Nakatsuhamaura, Minami-ise, Mie 516-0193, Japan
REFERENCE 2
AUTHORS Umeda,K., Matsuura,Y., Shimahara,Y., Takano,T. and Matsuyama,T.
TITLE Complete genome sequences of alpha-glucosidase-positive/negative
strains of Nocardia seriolae from Seriola species in Japan.
JOURNAL Unpublished (2023)
COMMENT Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
##Genome-Assembly-Data-START##
Assembly Method :: Unicycler v. 0.5.0
Genome Coverage :: 220x
Sequencing Technology :: BGI DNBseq; Nanopore MinION
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /collection_date="2002-10-24"
/db_xref="taxon:37332"
/geo_loc_name="Japan:Oita, Tsukumi, Tsukumi Bay"
/host="Seriola quinqueradiata"
/isolation_source="muscle isolate from a diseased fish in
a fish farm"
/lat_lon="33.10 N 131.89 E"
/mol_type="genomic DNA"
/organism="Nocardia seriolae"
/strain="024013"
protein /inference="COORDINATES:ab initio
prediction:MetaGeneAnnotator"
/locus_tag="NSER024013_09250"
/note="frameshifted, insertion/deletion at around
996485,996486,996489,995595,992781,997778,989843,988055,
988 058,996384,994469,994470,997809,989874,995634,989878,
989881 ,994508,994509,996431,996432,988115,992735,988133"
/note="possible pseudo due to internal stop codon"
/transl_table=11
BEGIN
1 MGELLLAVGA AATLVVTAPT VYGGPELAAL LRRERVNHMM ITPSALTSVD PSGLDALELL
61 VVAGEACPPE LVRRWAISLA GGRSRRFVNG YGPTEATILA NTAELTPDET VTIGGPLRTV
121 TEYVLDERLM PTLAGVAGEL YLAGDQLARG YHNRPGLTAE RFVANPFGAP GSRAYRTGDL
181 VRRTAAGELE YLGRNDFQVK IRGFRIELGE IDAALASYPS VDFAVTIGHE LADGATILAS
241 YVHADGAAAV DTDELIALAG RSLPAHMVPA AITVLDTIPL TPVGKLDRRA LPAPKLRVAE
301 FRAPAGRLET LVAEVFAELL GTVDPIGADD DFFGLGGNSL IAARGAARLG ALISARVPGR
361 LLFTAPTVAA LARELAGLEG AGGRAPLEAR PRPERIPLSP AQQRMWFLNQ FDPASAADNI
421 PLALRVTGAL DVTALRAAFG DVIERHEALR TVYPAVDGVG SQMILPAAEV IPDLVPRPVR
481 EEDLPGWLAG AALTGFDVSA RVPLRVELAR LGPDEHVIAV VLHHIAADGF STGPFARDLM
541 TAFLARRNGA VPPWRPLPVQ YADYTLWQRG ALGDEHEPGS LAATQIDYWR GALAGIPERI
601 DLPADRPRPA VASGQGATFA FEIGADLVAG VDELAHAGGA SPFMVLHSVF AALLARLSRT
661 DDIVIGSPVA GRGERELDDL VGMFVNTLAL RTEVDGGAGF RELLRAAKEV DLAAFSHAEL
721 PFERLVEVLD PVRTQAHHPL FQVAMFFQNL DAPRVELPGL VVESVESDGA IAKFDLQLSL
781 LPRANDGMGA VFTYATDLFD EATIAGFARR LVRLLSAVIA DTSRPIGDID LLDGAERTRM
841 LVDWNDTRHA IPEESLLDGY RRAVAAHPDV VAVHFEGVEL TYREFDERVN RLARLLIARG
901 VGAESLVGLA VRRSLDLVVG VYAVLTAGGG YVPLDPDHPA ERIAHILETA RPACVLTTTA
961 DAVPVPAGTQ VVSLDAVDPR AFSAAPVSDT ELLRPVRPEH PAYVIFTSGS TGRPKGVAVS
1021 HRAIHNQITW MLAEYPMGPG AVYLQKTATT FDVSLWGYFM PLRAGAKLVV ATHDGHRDPA
1081 YVAETIARHG VTVTDFVPSM LTVLAAHAAP GTIESLRDVF VIGEALPPET VAAFAGVSDA
1141 RVHNLYGPTE AAVSVTYWQA REDEHATVPI GVPQWNVGVY VLDSRLRPVP AGVAGELYLA
1201 GDQLARGYVR RPDLTSDRFV ANPFGTGERM YRTGDLVVWR DAGSGRSQRL EYIGRTDFQV
1261 KFRGQRIELG EIETALLARP GLSAAVASVM PSELGDQLVA HVVPLPGRTV DASALPAALA
1321 DSLPRYMIPS AIVVLDEFPL NASGKLDRKA LPAPSFSARR FRTPATALEE IVAGVFAEVL
1381 GIDRVGADDD FFALGGNSLI ATAVVARIGA ALGDRVPVRT LFESPTVTAL ASTVESRIRR
1441 GRTGELGSIP RPERLPLSPA QQRMWFLNRF EDLGDGTVTA GSAAYNLPFA LRLTGDLDVD
1501 ALSAALDDVV ARHEVLRTVY PETSDGPAQT VLAGGAPLPR LVVARAVASE IAAAVYELAT
1561 TPFDVTWEVP IRVRLLELTD ATPDPQFVLA VVAHHIAADA SSMAPLVRDI MTAYTARRGG
1621 GEPAWLPLRV QYADYAVWQR EVLGSESDPE SVAAQQLEYW RGELAGLPDL LELPTDRPRP
1681 AAVSALGSRV EVRIDPAVHA GVVRLARAHN ATVFMVVHAA LAALLARLSG TADIAIGTPV
1741 AGRGERELDD LIGMFVNTLV FRTRVDGGES FAELLARQRE TDLRAFSHSD IPFERLVEVL
1801 DPPRTTAHHP LFQVGLSFQN MARTALELPG LTIAPVESDV DVSQFDLHLV VSDGYDEAGT
1861 PLGIGGYLTY ASDLYDAGTV AGFVDRLNRL LAAVVSNPAL PVGDIELLAP DEWAAVAAAR
1921 TATAHPLDAT ANLLARFEAQ AARTPAATAL SFEGTSLTYG EFAERVHRLA RHLIASGIGP
1981 DTLVALGLRR SADLVVAMYA VLAAGGAYVP LDLDQPADRI GQVLETAQPM WVLTTSRDGF
2041 EPVEPCGLLR IDDLDLSGYP GAPVTDADRR APLRSSNIAY VIFTSGSTGR PKGVAVPHAA
2101 VVNQIAWITS EYGLSADDVV LLKTPQTFDV SVWELFAPLA VGARMVVATP DGHRDPQYLA
2161 EVIAAEGVTI TSCVPSMLSV FAGGVAAEQL SSLRALLVAG EAFTSDVVRA FRRVGSAALH
2221 NLYGPTEFTV HATHAPASDD MRGAVPIGRP VWNAQAYVLD SRLNPVLPGV AGELYLAGSQ
2281 LARGYFGRAD LTADRFVASP FGFGERMYRT GDLVRSDSDG SITYLGRTDF QVKLRGLRIE
2341 LGEIESALTA HDSVAQAVVV LNSDPRTGDR LVGYLVPSGS NVDVPLVKSA LAAALPSYMV
2401 PSAFVVLDAL PLNANGKLDR KALPEPEFEA TAFRAPSTPI EEIVAGVFTD VLGSGRSASP
2461 RSVGADDDFF ALGGNSLVAT QVAARLGAAL DTRVPVRMLF EAPTVAALAI RVEQQAGRGR
2521 KALTAGPRPD RVPLSLAQQR MWFLNRFDPA SAAYNIPAAV RLTGELNVAA LQQAVADTIG
2581 RHESLRTVYP QIDGEPRQVI RPAAEAVPDL TPVPVSVSSL PHRIAGVLSA GFDVAREIPV
2641 RAGLFRVEPA AVSGGGTAAE YVLVFVVHHI SADGWSMGPF TRDVMLAYAA RVQGEAPAWS
2701 PLPVQYADYT LWQREVLGSE NDPDSLISAQ ADYWRTTLAG LPDELNLPWD RPRPPVSSLR
2761 GGTVDFEIDA ELHGRLRDIA RERNATLFMV VHTALAVFLA RLSGTGDIAV GTPIAGRGEA
2821 ELDDVIGMFV NTLVLRTRVS GQQSFADLLA EVKDSDLGAF AHADMPFERL VELLNPERST
2881 ARNPLFQVAL SFENLPDAGF ELPGLRVGGV DFEIDTAKFD LELRVVGAAD SGATGILTFA
2941 RDLFDRATVQ GFAQRFLRVL EAIAADPEIG VGAIDILDGS ERADLVARFG LPALPTRTLP
3001 ELIADAVAVD PAAPAVVLEG RSLSYGELDS RSNRLARLLI GRGVGAEDLV AIAVPRSSDS
3061 YLAEWAVTKT GAAFVPVDPN YPADRIAHMV TDSGSRFGLT VSAVRAGLPD SVEWLVLDEL
3121 EPNAFADTVI DDSDRARPLR PEHPAYVIYT SGSTGVPKGV VVTHTGLVNF ATEQIERYGL
3181 DSASRALHFA SPSFDASILE FLLAVGGAGT LVVVPPGIYG GEELAELIRR ERVTHALITP
3241 AVLATLDPAG LDSLRVLIAG GEAVAAELVA KWAVPIGEGT LRDGAIRAFH NAYGPTEATI
3301 MTNLSDVLVP GAPVTIGGPI RGVRSLILDD RLQPVPVGVA GELYVAGTQL ARGYHARAGL
3361 TADRFVANPF AVGERMYRTG DVVRWTSDGE VEYVGRSDFQ VKVRGFRIEL GEIDAVLASH
3421 ETVDFAVTVG HKSTAGATAL VSYVLPVAGG DVDVAVLTEH VAALLPEYMV PASITVLDAI
3481 PLTPVGKLDR RALPEPVFAD RARGAEFLAP RTPLEHTVAA VVAEVLGLER VGVYDDFFAL
3541 GGNSLLATQV AARIGAALKA RVPVRAVFEA STVAGLAAEA EQYAGAGDRK ALTAGPRPDI
3601 VPLSLAQQRM WFLNQFDTIS AAYNIPVAVR LSGDLDTAAL QVAVADLIER HEVLRTIYPQ
3661 VNGDPSQLIL PAGQALPDLT PVVVGADSLR DRITEFLGAG CDVTTEVPVR ARLFHLDGGE
3721 SAEYVLAFVV HHIGADGWSM GPLTRDVMTA YAARVSGTAP GWAPLPVQYA DFALWQREVL
3781 GSEDDPASLI AAQSEYWRAA LAGLPDELNL PADRPRPPVA SLRGGTVRFE IAAELHHCLE
3841 SLARDRNTTL FMVVHTALAV FLARLSGSAD LAIGTPIAGR GEAELDDVIG MFVNTLVLRT
3901 RVSGQQSFED LLAEVRDTDL AAFAHADMPF ERLVELLNPE RSTARNPLFQ AALSFENLPD
3961 AGFELPGLRI GAVDFAADIA KFDLQLTVAG ASDAGATGIF TYARDLFDAS TVEAFAQRFL
4021 RLLTDIVARP GHPVGDLELL SPTEFEDLTD RQGGPAVPAR TYPDLIADAV AIDPAAPAVV
4081 SDGRSLTYGE LDSRSNRLAR LLIEGGIGTE DLVAVAVPRS AESYFAEWAV SKTGAAFLPV
4141 DPTYPADRIA HMLTDSGAVI GLTVAAVRAD LPDSVEWLVL DELEPDGFAD NAIADAERVR
4201 PLRPEHPAYV VYTSGSTGLP KGVVVTHAGL ANFAAEQVDR YGLDSATRAL HFASPSFDGS
4261 MMEFLMALGG GGALVVVPTG IYGGEELAEV IRRERVTHAF ITTAALATFA PDGLDSLRVL
4321 AVGGEAVPAE LIAKWAVRLP DGTIRAFHDV YGPTETTIVT NIGDPLVPGD PVTIGGPVRG
4381 MRSLILDDRL RPVPVGVAGE LYLSGIQLAR GYHARPGLSA ERFVANPFGA GERMYRTGDV
4441 VRWSPDRRIE YVGRSDFQLK VRGFRIELGE IDAALSAHAS VDFAVTVGHR QESGATILAA
4501 YVVPVAGGVI DVAALTEHVA GRLPEYMVPT AITVLDAVPL TPVGKLDRRA LPEPVLVQRE
4561 FVAPRTPSER LVADTMAAVL GVERVGVHDD FFTLGGNSLL ATQVVARLGA ALDARVPVRA
4621 LFEAPTVAAL AAGVEQRAGD GGRPALTARK RPEQVPLSLA QQRMWFLNRF DTASAAYNIP
4681 VAVRLTGELD TAALQDAVAD LIGRHEILRT IYPQADGSPV QVILPAAQAI PDLTPVEVDA
4741 ETLLERVAEF LGTGFDVTTE IPLRARLFRV HGGESAEYVL AFVVHHISAD GWSMGPLTRD
4801 VMTAYAARVS GIAPGWAPLP VQYADFALWQ REVLGREDDP TGLLATQSEY WRAALAGLPD
4861 ELNLPADRPR PPVASLRGGT VRFEIPADLR RGLENLARER NATPFMVIHA ALAVFLARLS
4921 GTDDIAVGTP IAGRGEAELD DVIGMFVNTL VLRTRVSGQT FTDLLAETKD TDLAAFAHAD
4981 VPFERLVEVL NPERSTARNP LFQVALSFTN LPDTGFELPG LRVGAVDFEV GIAKFDLELT
5041 VAGWAESGTV GMFTFARDLF DAATVEVFAQ RFLRVLEAIA ADPEIGVGAI DILDGSERAD
5101 LVARFGLPAM PARTLPQLIA DAVAIDRDAP AVVFEGRSLS YGELDERSNR LARLLIGHGI
5161 GAEDLVAVAV PRSDESYLAE WAVSKTGAAF VPGDPNYPAD RITHMVTDSG SLVGLTVASV
5221 QASLPDTVEW LVLDEMDPNA FSDN
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