LOCUS       BDN84349.1              1222 aa    PRT              BCT 09-FEB-2023
DEFINITION  Mycobacterium pseudoshottsii transcription-repair-coupling
            factor protein.
ACCESSION   AP026367-4564
PROTEIN_ID  BDN84349.1
SOURCE      Mycobacterium pseudoshottsii
  ORGANISM  Mycobacterium pseudoshottsii
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium
            ulcerans group.
REFERENCE   1  (bases 1 to 6051062)
  AUTHORS   Komine,T., Fukano,H. and Wada,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JUN-2022)
            Contact:Takeshi Komine
            Nippon Veterinary and Life Science University, School of
            Veterinary Medicine; Kyohnan-cho 1-7-1, Musashino, Tokyo 180-8602,
            Japan
REFERENCE   2
  AUTHORS   Komine,T., Fukano,H., Yoshida,M., Inohana,M., Hoshino,Y.,
            Kurata,O. and Wada,S.
  TITLE     Complete Genome and Partial Megaplasmid Sequences of Mycobacterium
            pseudoshottsii Strain NJB1907-Z4, Isolated from an Aquarium-Reared
            Japanese Sardine (Sardinops melanostictus) in Japan
  JOURNAL   Microbiol Resour Announc 11 (12), e00785-22 (2022)
  REMARK    Publication Status: Online-Only
            DOI:10.1128/mra.00785-22
COMMENT     Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Flye v. 2.9; galaxy v. 0
            Genome Coverage       :: 189x
            Sequencing Technology :: Pacbio sequel; Illumina HiSeqX
            ##Genome-Assembly-Data-END##
FEATURES             Qualifiers
     source          /collection_date="2019-07-10"
                     /db_xref="taxon:265949"
                     /geo_loc_name="Japan:Tokyo"
                     /host="Sardinops melanostictus"
                     /isolation_source="liver of Japanese sardine"
                     /mol_type="genomic DNA"
                     /organism="Mycobacterium pseudoshottsii"
                     /strain="NJB1907-Z4"
     protein         /gene="mfd"
                     /inference="COORDINATES:ab initio
                     prediction:MetaGeneAnnotator"
                     /inference="similar to AA sequence:UniProtKB:P9WMQ5"
                     /locus_tag="NJB1907Z4_C45640"
                     /transl_table=11
BEGIN
        1 MTAPGAASPD TPIAGLVDLA LTAPTFQQLI ARASDRPDEL TLVGPASARS FVASALAQQG
       61 PLLVVTATGR EADDVTAELR GVFGEAVALF PSWETLPHER LSPGVDTVGA RLLLLRRLAH
      121 PDDTRLGPPL RVVVTAVRSL LQPMTPQLGR QEPVSLSVGQ EIGFDEVIAR LVELAYTRVD
      181 MVGRRGEFAV RGGILDLFAP TAEHPVRVEF WGDEITEMRM FSVADQRSIP EIEVSTLVAV
      241 ACRELLLTED VRARAAALAA QHPASENTVT GSVIDMLAKL AEGIPTDGME ALLPVLRPDD
      301 HALLTDQLAE GTPVLVCDPE KVRTRAADLI KTGREFLEAS WSVAAMGTDA PVDVEALGGS
      361 GFAELEQVQT AASSSGHPWW TLSQLSEESA TELEVRAAPS ARGHQKDIDD IFAMLRAHVS
      421 TGGYAVMVEP GTGTAHRMVE RLAESDIPAA MLEPGAAPKL GVVGVLKGPL RDGVIVPGAN
      481 LVVVTETNLT GNRATAVEGK RLAAKRRNTV DPLALTAGDL VVHDQHGIGR FVEMVERTVG
      541 GARREYLVLE YASAKRGGGS DKLYVPMDSL DQLSRYVGGQ APALSRLGGS DWTNTKTKAR
      601 KAVREIAGEL VALYAKRQAS PGHAFAPDTP WQAEMEDAFG FTETVDQLTA ITEVKGDMEK
      661 SIPMDRVICG DVGYGKTEIA VRAAFKAVQD GKQVAVLVPT TLLADQHLQT FTDRMAGFPV
      721 TVKGLSRFTD PAESRTVIEG MADGSVDVVI GTHRLLQTGV RWKDLGLVVV DEEQRFGVEH
      781 KEHIKSLRSH VDVLTMSATP IPRTLEMSLA GIREMSTILT PPEERYPVLT YVGPHDDKQV
      841 AAALRRELLR DGQAFYVHNR VSSIDDTAAR IRKLVPEARV VVAHGQMPED LLERTVQGFW
      901 QREFDILVCT TIVETGLDIS NANTLIVERA DTFGLSQLHQ LRGRVGRSRE RGYAYFLYPP
      961 QAPLTETAYD RLATIAQNNE LGAGMAVALK DLEIRGAGNV LGVEQSGHVA GVGFDLYVRL
     1021 VGEAVEAYRA AADGKMVTTP EEPKDVRIDL PVDAHLPPDY IGSDRLRLEA YRRLATATSD
     1081 SGVAAVVDEL IDRYGALPEP ALRLVAVARL RLLCRASGIT DVSAPSSATV RLAPMDLPDS
     1141 AQVRLKRMYP GGHYRATTST VQVPIPRDGG VGAPRIRDVE LVQMVANLVT ALAGKPQQDI
     1201 GRTSLSEDDA GATASGKERQ AR
//