LOCUS BDN83812.1 1806 aa PRT BCT 09-FEB-2023
DEFINITION Mycobacterium pseudoshottsii phthiocerol/phenolphthiocerol
synthesis polyketide synthase type I PpsD protein.
ACCESSION AP026367-4027
PROTEIN_ID BDN83812.1
SOURCE Mycobacterium pseudoshottsii
ORGANISM Mycobacterium pseudoshottsii
Bacteria; Bacillati; Actinomycetota; Actinomycetes;
Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium
ulcerans group.
REFERENCE 1 (bases 1 to 6051062)
AUTHORS Komine,T., Fukano,H. and Wada,S.
TITLE Direct Submission
JOURNAL Submitted (27-JUN-2022)
Contact:Takeshi Komine
Nippon Veterinary and Life Science University, School of
Veterinary Medicine; Kyohnan-cho 1-7-1, Musashino, Tokyo 180-8602,
Japan
REFERENCE 2
AUTHORS Komine,T., Fukano,H., Yoshida,M., Inohana,M., Hoshino,Y.,
Kurata,O. and Wada,S.
TITLE Complete Genome and Partial Megaplasmid Sequences of Mycobacterium
pseudoshottsii Strain NJB1907-Z4, Isolated from an Aquarium-Reared
Japanese Sardine (Sardinops melanostictus) in Japan
JOURNAL Microbiol Resour Announc 11 (12), e00785-22 (2022)
REMARK Publication Status: Online-Only
DOI:10.1128/mra.00785-22
COMMENT Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
##Genome-Assembly-Data-START##
Assembly Method :: Flye v. 2.9; galaxy v. 0
Genome Coverage :: 189x
Sequencing Technology :: Pacbio sequel; Illumina HiSeqX
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /collection_date="2019-07-10"
/db_xref="taxon:265949"
/geo_loc_name="Japan:Tokyo"
/host="Sardinops melanostictus"
/isolation_source="liver of Japanese sardine"
/mol_type="genomic DNA"
/organism="Mycobacterium pseudoshottsii"
/strain="NJB1907-Z4"
protein /gene="ppsD"
/inference="COORDINATES:ab initio
prediction:MetaGeneAnnotator"
/inference="similar to AA sequence:UniProtKB:Q7TXL7"
/locus_tag="NJB1907Z4_C40270"
/transl_table=11
BEGIN
1 MTSLAERAAQ MSPKAREVLA RELVRAGTAF PTDIAEPVAV VGIGCRLPGN VSGPDSFWQL
61 LVDGRDAVDE VPADRWDADA FYDPDPRAPG RMTTKWGGFI DDVAGFDADF FGITPREAVA
121 MDPQQRVLLE VAWEALEHAG LPPDPLSGTR TAAVMGLSAW DYTIVNLERR AEIDAYISTG
181 NPHSAAVGRI SYLLGLRGPA VAVDTACSSS LVALHLACQS LRLRESDVAL AGGVQLMLSP
241 FTSIALSKWS ALSPTGRCKT FDALADGFVR SEGCGVVVLK RLVDAVRDGD RVLAVVRGSA
301 INQDGRSNGM TAPNAAAQRD VIGTALKLAD ATADSVNYVE THGTGTVLGD PIEFEALAAT
361 YGLGKDKGAD SCALGSVKTN LGHLEAAAGI TSFIKATLAV AHGYIPPNLH FSRWNPAIDA
421 SSTRLFVPTQ GAQWPAGLRR AAVSSFGLSG TNAHVVLEQP PAPAPADQPR SGLSALVVSG
481 KTPQRVAAMA SALADWVDGP GAQTPLADVA HTLNHHRARH GKFGAVVARD RAGAVEGLRA
541 LAAGQPGPGV LGCQDVQNQP GTVFVYSGQG SQWVGMGRQL LADEPSFAAA IAELEPDFVA
601 QAGFSLQQTL TEGREVVGID RIQPVLVGIQ LALTALWRSH GVTPDAVVGH SMGEVSAAVV
661 AGALTPADGF KVIATRSRLM ARLAGQGAMA LLELDSDAAE ALIADYPQVT LAVHASPHQS
721 VVAGPPESVD AVIAAVAGQN RLARRIEVDV ASHHPIIDPI LPDLRSALAD LTPQPPAIPM
781 ITTTCEQPQP VLDADYWAAN LRNPVRFHQA ITTAGAQHHT FVEISPHPLL THAITDTLAA
841 AESRTRLITA TLQRDGDDAI TFHTNLAAVG KKPADAVTGQ LADIPVTPWQ HTQFWVEDRS
901 GISELVAAHP LLGVHIEVPS GHDHVWQADV GTKACPWLGD HKVFGQAIMP AAGFAEIALA
961 AASEAFDLPV DALSINQLEI EQMLDLDEHT QVTTQLTRRA DDKTRIEIYS RSASGWRRHA
1021 VAKAETSTPS AAPVLEERTS RQDETDIKPA DLYALLRQAG QNHGPAFAAL TRILRRPDGS
1081 VETEITLSDE APRHQGYRIH PAMLDAALQS LAAAVPNDEF AGSAEASYLP VSFETLRVYS
1141 NPGRHARCRA QLTNLNDGGA GKLGRITLTD DAGNVTVEIN DIYLRRVERR SVPLPLAQKI
1201 FDTEWVEKSI AGADQPDAPG SWLVLTDAKS NADEFVARWS SPQRRVITAD LGDEAAMLAA
1261 FAETAGDPER LPVGVVVFVG GAGNNSGAAD DGRISYDGLI QSRDTVWQIS TVVRAIVGTW
1321 HGRAPRLWLV TEGGLVVHDE PGRPAIGALQ GLVRVLAYEH PELRATLVDL DTGADSVTRL
1381 AGELSSPRDD PNYDDVVAWR DGRRYVTQLC RAILDPEPQR DPVIRPGASY IVTGGLGGLG
1441 LVVARWLVDS GAGRVVFNGR SEPSDEQRKV LAELESRAEV VVVCGDSATE GVAESLVAAA
1501 EDQQRQLRGI VHGAAVIDDS LLFSMTKDSL ERVWAPKAAG ALRLHDATAT RELDWWLGFS
1561 STASLLGSPG QTAYACASAW LDGLVAWRRA AGLPAATINW GPWSEVGVAQ ALVGTPLDPI
1621 TPAEGVVALD ALLAADRGRT GVARLRSDRA LIAFPEIRNL GYFTLVVQEL DAAGDGGDWA
1681 GPEALKEMDP AEARQVVTER LHTRIAAVMG YADRSAVDAS MPLTELGLDS LMAVRIRNTA
1741 RADFGVEPPV TLILQGASLH GLTVDVIRQL DLAGDEQTHE HVDVVRDRAQ QRAAARHGAA
1801 MRRKRG
//