LOCUS BDB45988.1 4402 aa PRT VRL 15-OCT-2021
DEFINITION Severe acute respiratory syndrome coronavirus 2 ORF1a
polyprotein protein.
ACCESSION BS001203-2
PROTEIN_ID BDB45988.1
SOURCE Severe acute respiratory syndrome coronavirus 2
ORGANISM Severe acute respiratory syndrome coronavirus 2
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae;
Betacoronavirus; Sarbecovirus; Betacoronavirus pandemicum.
REFERENCE 1 (bases 1 to 29805)
AUTHORS
CONSRTM Japan COVID-19 Open Data Consortium
TITLE Direct Submission
JOURNAL Submitted (14-OCT-2021)
Contact:Hiroshi Mori
National Institute of Genetics; 1111 Yata, Mishima, Shizuoka
411-8540, Japan
URL :https://www.ddbj.nig.ac.jp/sars-cov-2
REFERENCE 2
AUTHORS Nagaoka,H., Arita,Y., Ishigami,K., Mori,H., Tanizawa,Y., Asano,S.,
Fujisawa,T., Arita,M., Kurokawa,K., Mitsunaga,S., Toyoda,A. and
Inoue,I.
TITLE Whole-genome sequencing test of SARS-CoV-2 variants from Shizuoka
samples.
JOURNAL Unpublished
COMMENT The genome was sequenced and analyzed under the collaboration
between Shizuoka Institute of Environment and Hygiene, National
Institute of Genetics, and Shizuoka Prefecture.
##Assembly-Data-START##
Assembly Method :: META_VRL_LONG v. 1.0.0
Coverage :: 3983x
Sequencing Technology :: Nanopore GridION
##Assembly-Data-END##
FEATURES Qualifiers
source /collection_date="2021-04-27"
/db_xref="taxon:2697049"
/geo_loc_name="Japan:Shizuoka, east"
/host="Homo sapiens, female"
/isolate="hCoV-19/Japan/SZ-NIG-Y21088/2021"
/isolation_source="saliva"
/mol_type="genomic RNA"
/organism="Severe acute respiratory syndrome coronavirus
2"
protein /gene="ORF1ab"
/transl_table=1
BEGIN
1 MESLVPGFNE KTHVQLSLPV LQVRDVLVRG FGDSVEEVLS EARQHLKDGT CGLVEVEKGV
61 LPQLEQPYVF IKRSDARTAP HGHVMVELVA ELEGIQYGRS GETLGVLVPH VGEIPVAYRK
121 VLLRKNGNKG AGGHSYGADL KSFDLGDELG TDPYEDFQEN WNTKHSSGVT RELMRELNGG
181 AYTRYVDNNF CGPDGYPLEC IKDLLARAGK ASCTLSEQLD FIDTKRGVYC CREHEHEIAW
241 YTERSEKSYE LQTPFEIKLA KKFDTFNGEC PNFVFPLNSI IKTIQPRVEK KKLDGFMGRI
301 RSVYPVASPN ECNQMCLSTL MKCDHCGETS WQTGDFVKAT CELCGTENLT KEGATTCGYL
361 PQNAVVKIYC PACHNSEVGP EHSLAEYHNE SGLKTILRKG GRTIAFGGCV FSYVGCHNKC
421 AYWVPRASAN IGCNHTGVVG EGSEGLNDNL LEILQKEKVN INIVGDFKLN EEIAIILASF
481 SASTSAFVET VKGLDYKAFK QIVESCGNFK VTKGKAKKGA WNIGEQKSIL SPLYAFASEA
541 ARVVRSIFSR TLETAQNSVR VLQKAAITIL DGISQYSLRL IDAMMFTSDL ATNNLVVMAY
601 ITGGVVQLTS QWLTNIFGTV YEKLKPVLDW LEEKFKEGVE FLRDGWEIVK FISTCACEIV
661 GGQIVTCAKE IKESVQTFFK LVNKFLALCA DSIIIGGAKL KALNLGETFV THSKGLYRKC
721 VKSREETGLL MPLKAPKEII FLEGETLPTE VLTEEVVLKT GDLQPLEQPT SEAVEAPLVG
781 TPVCINGLML LEIKDTEKYC ALAPNMMVTN NTFTLKGGAP TKVTFGDDTV IEVQGYKSVN
841 ITFELDERID KVLNEKCSAY TVELGTEVNE FACVVADAVI KTLQPVSELL TPLGIDLDEW
901 SMATYYLFDE SGEFKLASHM YCSFYPPDED EEEGDCEEEE FEPSTQYEYG TEDDYQGKPL
961 EFGATSAALQ PEEEQEEDWL DDDSQQTVGQ QDGSEDNQTT IIQTIVEVQP QLEMELTPVV
1021 QTIEVNSFSG YLKLTDNVYI KNADIVEEAK KVKPTVVVNA ANVYLKHGGG VAGALNKATN
1081 NAMQVESDDY IATNGPLKVG GSCVLSGHNL AKHCLHVVGP NVNKGEDIQL LKSAYENFNQ
1141 HEVLLAPLLS AGIFGADPIH SLRVCVDTVR TNVYLAVFDK NLYDKLVSSF LEMKSEKQVE
1201 QKIAEIPKEE VKPFITESKP SVEQRKQDDK KIKACVEEVT TTLEETKFLT ENLLLYIDIN
1261 GNLHPDSATL VSDIDITFLK KDAPYIVGDV VQEGVLTAVV IPTKKAGGTT EMLAKALRKV
1321 PTDNYITTYP GQGLNGYTVE EAKTVLKKCK SAFYILPSII SNEKQEILGT VSWNLREMLA
1381 HAEETRKLMP VCVETKAIVS TIQRKYKGIK IQEGVVDYGA RFYFYTSKTT VASLINTLND
1441 LNETLVTMPL GYVTHGLNLE EAARYMRSLK VPATVSVSSP DAVTAYNGYL TSSSKTPEEH
1501 FIETISLAGS YKDWSYSGQS TQLGIEFLKR GDKSVYYTSN PTTFHLDGEV ITFDNLKTLL
1561 SLREVRTIKV FTTVDNINLH TQVVDMSMTY GQQFGPTYLD GADVTKIKPH NSHEGKTFYV
1621 LPNDDTLRVE AFEYYHTTDP SFLGRYMSAL NHTKKWKYPQ VNGLTSIKWA DNNCYLATAL
1681 LTLQQIELKF NPPALQDAYY RARAGEADNF CALILAYCNK TVGELGDVRE TMSYLFQHAN
1741 LDSCKRVLNV VCKTCGQQQT TLKGVEAVMY MGTLSYEQFK KGVQIPCTCG KQATKYLVQQ
1801 ESPFVMMSAP PAQYELKHGT FTCASEYTGN YQCGHYKHIT SKETLYCIDG ALLTKSSEYK
1861 GPITDVFYKE NSYTTTIKPV TYKLDGVVCT EIDPKLDNYY KKDNSYFTEQ PIDLVPNQPY
1921 PNASFDNFKF VCDNIKFADD LNQLTGYKKP ASRELKVTFF PDLNGDVVAI DYKHYTPSFK
1981 KGAKLLHKPI VWHVNNATNK ATYKPNTWCI RCLWSTKPVE TSNSFDVLKS EDAQGMDNLA
2041 CEDLKPVSEE VVENPTIQKD VLECNVKTTE VVGDIILKPA NNSLKITEEV GHTDLMAAYV
2101 DNSSLTIKKP NELSRVLGLK TLATHGLAAV NSVPWDTIAN YAKPFLNKVV STTTNIVTRC
2161 LNRVCTNYMP YFFTLLLQLC TFTRSTNSRI KASMPTTIAK NTVKSVGKFC LEASFNYLKS
2221 PNFSKLINIT IWFLLLSVCL GSLIYSTAAL GVLMSNLGMP SYCTGYREGY LNSTNVTIAT
2281 YCTGSIPCSV CLSGLDSLDT YPSLETIQIT ISSFKWDLTA FGLVAEWFLA YILFTRFFYV
2341 LGLAAIMQLF FSYFAVHFIS NSWLMWLIIN LVQMAPISAM VRMYIFFASF YYVWKSYVHV
2401 VDGCNSSTCM MCYKRNRATR VECTTIVNGV RRSFYVYANG GKGFCKLHNW NCVNCDTFCA
2461 GSTFISDEVA RDLSLQFKRP INPTDQSSYI VDSVTVKNGS IHLYFDKAGQ KTYERHSLSH
2521 FVNLDNLRAN NTKGSLPINV IVFDGKSKCE ESSAKSASVY YSQLMCQPIL LLDQALVSDV
2581 GDSAEVAVKM FDAYVNTFSS TFNVPMEKLK TLVATAEAEL AKNVSLDNVL STFISAARQG
2641 FVDSDVETKD VVECLKLSHQ SDIEVTGDSC NNYMLTYNKV ENMTPRDLGA CIDCSARHIN
2701 AQVAKSHNIA LIWNVKDFMS LSEQLRKQIR SAAKKNNLPF KLTCATTRQV VNVVTTKIAL
2761 KGGKIVNNWL KQLIKVTLVF LFVAAIFYLI TPVHVMSKHT DFSSEIIGYK AIDGGVTRDI
2821 ASTDTCFANK HADFDTWFSQ RGGSYTNDKA CPLIAAVITR EVGFVVPGLP GTILRTTNGD
2881 FLHFLPRVFS AVGNICYTPS KLIEYTDFAT SACVLAAECT IFKDASGKPV PYCYDTNVLE
2941 GSVAYESLRP DTRYVLMDGS IIQFPNTYLE GSVRVVTTFD SEYCRHGTCE RSEAGVCVST
3001 SGRWVLNNDY YRSLPGVFCG VDAVNLLTNM FTPLIQPIGA LDISASIVAG GIVAIVVTCL
3061 AYYFMRFRRA FGEYSHVVAF NTLLFLMSFT VLCLTPVYSF LPGVYSVIYL YLTFYLTNDV
3121 SFLAHIQWMV MFTPLVPFWI TIAYIICIST KHFYWFFSNY LKRRVVFNGV SFSTFEEAAL
3181 CTFLLNKEMY LKLRSDVLLP LTQYNRYLAL YNKYKYFSGA MDTTSYREAA CCHLAKALND
3241 FSNSGSDVLY QPPQTSITSA VLQSGFRKMA FPSGKVEGCM VQVTCGTTTL NGLWLDDVVY
3301 CPRHVICTSE DMLNPNYEDL LIRKSNHNFL VQAGNVQLRV IGHSMQNCVL KLKVDTANPK
3361 TPKYKFVRIQ PGQTFSVLAC YNGSPSGVYQ CAMRPNFTIK GSFLNGSCGS VGFNIDYDCV
3421 SFCYMHHMEL PTGVHAGTDL EGNFYGPFVD RQTAQAAGTD TTITVNVLAW LYAAVINGDR
3481 WFLNRFTTTL NDFNLVAMKY NYEPLTQDHV DILGPLSAQT GIAVLDMCAS LKELLQNGMN
3541 GRTILGSALL EDEFTPFDVV RQCSGVTFQS AVKRTIKGTH HWLLLTILTS LLVLVQSTQW
3601 SLFFFLYENA FLPFAMGIIA MSAFAMMFVK HKHAFLCLFL LPSLATVAYF NMVYMPASWV
3661 MRIMTWLDMV DTSLKLKDCV MYASAVVLLI LMTARTVYDD GARRVWTLMN VLTLVYKVYY
3721 GNALDQAISM WALIISVTSN YSGVVTTVMF LARGIVFMCV EYCPIFFITG NTLQCIMLVY
3781 CFLGYFCTCY FGLFCLLNRY FRLTLGVYDY LVSTQEFRYM NSQGLLPPKN SIDAFKLNIK
3841 LLGVGGKPCI KVATVQSKMS DVKCTSVVLL SVLQQLRVES SSKLWAQCVQ LHNDILLAKD
3901 TTEAFEKMVS LLSVLLSMQG AVDINKLCEE MLDNRATLQA IASEFSSLPS YAAFATAQEA
3961 YEQAVANGDS EVVLKKLKKS LNVAKSEFDR DAAMQRKLEK MADQAMTQMY KQARSEDKRA
4021 KVTSAMQTML FTMLRKLDND ALNNIINNAR DGCVPLNIIP LTTAAKLMVV IPDYNTYKNT
4081 CDGTTFTYAS ALWEIQQVVD ADSKIVQLSE ISMDNSPNLA WPLIVTALRA NSAVKLQNNE
4141 LSPVALRQMS CAAGTTQTAC TDDNALAYYN TTKGGRFVLA LLSDLQDLKW ARFPKSDGTG
4201 TIYTELEPPC RFVTDTPKGP KVKYLYFIKG LNNLNRGMVL GSLAATVRLQ AGNATEVPAN
4261 STVLSFCAFA VDAAKAYKDY LASGGQPITN CVKMLCTHTG TGQAITVTPE ANMDQESFGG
4321 ASCCLYCRCH IDHPNPKGFC DLKGKYVQIP TTCANDPVGF TLKNTVCTVC GMWKGYGCSC
4381 DQLREPMLQS ADAQSFLNGF AV
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