LOCUS       BDB07873.1              1270 aa    PRT              VRL 07-SEP-2021
DEFINITION  Severe acute respiratory syndrome coronavirus 2 surface
            glycoprotein protein.
ACCESSION   BS001167-3
PROTEIN_ID  BDB07873.1
SOURCE      Severe acute respiratory syndrome coronavirus 2
  ORGANISM  Severe acute respiratory syndrome coronavirus 2
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae;
            Betacoronavirus; Sarbecovirus; Betacoronavirus pandemicum.
REFERENCE   1  (bases 1 to 29803)
  AUTHORS   
  CONSRTM   Japan COVID-19 Open Data Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (24-AUG-2021)
            Contact:Hiroshi Mori
            National Institute of Genetics; 1111 Yata, Mishima, Shizuoka
            411-8540, Japan
            URL    :https://www.ddbj.nig.ac.jp/sars-cov-2
REFERENCE   2
  AUTHORS   Nagaoka,H., Arita,Y., Ishigami,K., Mori,H., Tanizawa,Y., Asano,S.,
            Fujisawa,T., Arita,M., Kurokawa,K., Mitsunaga,S., Toyoda,A. and
            Inoue,I.
  TITLE     Whole-genome sequencing test of SARS-CoV-2 variants from Shizuoka
            samples.
  JOURNAL   Unpublished
COMMENT     The genome was sequenced and analyzed under the collaboration
            between Shizuoka Institute of Environment and Hygiene, National
            Institute of Genetics, and Shizuoka Prefecture.
            
            ##Assembly-Data-START##
            Assembly Method       :: META_VRL_LONG v. 1.0.0
            Coverage              :: 686x
            Sequencing Technology :: Nanopore GridION
            ##Assembly-Data-END##
FEATURES             Qualifiers
     source          /collection_date="2021-04-22"
                     /db_xref="taxon:2697049"
                     /geo_loc_name="Japan:Shizuoka, west"
                     /host="Homo sapiens, male"
                     /isolate="hCoV-19/Japan/SZ-NIG-Y21047/2021"
                     /isolation_source="oropharyngeal swab"
                     /mol_type="genomic RNA"
                     /organism="Severe acute respiratory syndrome coronavirus
                     2"
     protein         /gene="S"
                     /transl_table=1
BEGIN
        1 MFVFLVLLPL VSSQCVNLTT RTQLPPAYTN SFTRGVYYPD KVFRSSVLHS TQDLFLPFFS
       61 NVTWFHAISG TNGTKRFDNP VLPFNDGVYF ASTEKSNIIR GWIFGTTLDS KTQSLLIVNN
      121 ATNVVIKVCE FQFCNDPFLG VYHKNNKSWM ESEFRVYSSA NNCTFEYVSQ PFLMDLEGKQ
      181 GNFKNLREFV FKNIDGYFKI YSKHTPINLV RDLPQGFSAL EPLVDLPIGI NITRFQTLLA
      241 LHRSYLTPGD SSSGWTAGAA AYYVGYLQPR TFLLKYNENG TITDAVDCAL DPLSETKCTL
      301 KSFTVEKGIY QTSNFRVQPT ESIVRFPNIT NLCPFGEVFN ATRFASVYAW NRKRISNCVA
      361 DYSVLYNSAS FSTFKCYGVS PTKLNDLCFT NVYADSFVIR GDEVRQIAPG QTGKIADYNY
      421 KLPDDFTGCV IAWNSNNLDS KVGGNYNYLY RLFRKSNLKP FERDISTEIY QAGSTPCNGV
      481 EGFNCYFPLQ SYGFQPTYGV GYQPYRVVVL SFELLHAPAT VCGPKKSTNL VKNKCVNFNF
      541 NGLTGTGVLT ESNKKFLPFQ QFGRDIDDTT DAVRDPQTLE ILDITPCSFG GVSVITPGTN
      601 TSNQVAVLYQ GVNCTEVPVA IHADQLTPTW RVYSTGSNVF QTRAGCLIGA EHVNNSYECD
      661 IPIGAGICAS YQTQTNSHRR ARSVASQSII AYTMSLGAEN SVAYSNNSIA IPINFTISVT
      721 TEILPVSMTK TSVDCTMYIC GDSTECSNLL LQYGSFCTQL NRALTGIAVE QDKNTQEVFA
      781 QVKQIYKTPP IKDFGGFNFS QILPDPSKPS KRSFIEDLLF NKVTLADAGF IKQYGDCLGD
      841 IAARDLICAQ KFNGLTVLPP LLTDEMIAQY TSALLAGTIT SGWTFGAGAA LQIPFAMQMA
      901 YRFNGIGVTQ NVLYENQKLI ANQFNSAIGK IQDSLSSTAS ALGKLQDVVN QNAQALNTLV
      961 KQLSSNFGAI SSVLNDILAR LDKVEAEVQI DRLITGRLQS LQTYVTQQLI RAAEIRASAN
     1021 LAATKMSECV LGQSKRVDFC GKGYHLMSFP QSAPHGVVFL HVTYVPAQEK NFTTAPAICH
     1081 DGKAHFPREG VFVSNGTHWF VTQRNFYEPQ IITTHNTFVS GNCDVVIGIV NNTVYDPLQP
     1141 ELDSFKEELD KYFKNHTSPD VDLGDISGIN ASVVNIQKEI DRLNEVAKNL NESLIDLQEL
     1201 GKYEQYIKWP WYIWLGFIAG LIAIVMVTIM LCCMTSCCSC LKGCCSCGSC CKFDEDDSEP
     1261 VLKGVKLHYT
//