LOCUS BAK68480.1 778 aa PRT BCT 07-OCT-2016
DEFINITION Sphingobium sp. SYK-6 TonB-dependent receptor-like protein protein.
ACCESSION AP012222-3805
PROTEIN_ID BAK68480.1
SOURCE Sphingobium sp. SYK-6
ORGANISM Sphingobium sp. SYK-6
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE 1 (bases 1 to 4199332)
AUTHORS Oguchi,A., Ankai,A., Fukui,S., Takahashi,M., Yashiro,I., Kato,Y.,
Sasaki,K., Sekiguchi,M., Harada,T., Nakamura,S., Katano,Y.,
Yamada,S., Nakazawa,H., Kamimura,N., Kasai,D., Fukuda,M.,
Masai,E., Yamazaki,S. and Fujita,N.
TITLE Direct Submission
JOURNAL Submitted (28-JUN-2011)
Contact:Director-General Department of Biotechnology
National Institute of Technology and Evaluation, Biological
Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066,
Japan
URL :http://www.bio.nite.go.jp/
REFERENCE 2
AUTHORS Masai,E., Kamimura,N., Kasai,D., Oguchi,A., Ankai,A., Fukui,S.,
Takahashi,M., Yashiro,I., Sasaki,H., Harada,T., Nakamura,S.,
Katano,Y., Narita-Yamada,S., Nakazawa,H., Hara,H., Katayama,Y.,
Fukuda,M., Yamazaki,S. and Fujita,N.
TITLE Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a
Degrader of Lignin-Derived Biaryls and Monoaryls
JOURNAL J. Bacteriol. 194 (2), 534-535 (2012)
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: phred/phrap v. 0.020425.c
Genome Coverage :: 8.0x
Sequencing Technology :: Sanger ABI3730
##Genome-Assembly-Data-END##
Please visit our web site.
URL:http://www.bio.nite.go.jp/
DOGAN ; Database of Genomes Analyzed at NITE
The database contains genome sequence data, physical maps
and the genomic and proteomic data of the microorganisms
analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top
Kamimura, N., Kasai, D., Fukuda, M., Masai, E. are at Department
of Bioengineering, Nagaoka University of Technology.
FEATURES Qualifiers
source /db_xref="NBRC:103272"
/db_xref="taxon:627192"
/mol_type="genomic DNA"
/note="strain coidentity: NBRC 103272"
/organism="Sphingobium sp. SYK-6"
/strain="SYK-6"
protein /locus_tag="SLG_38050"
/transl_table=11
BEGIN
1 MICRSYPKRR AIRGASLLVL SALATAAHGQ QAETPAPQDD SNADIVVTAQ FRSTNLQDTP
61 LAITALTGEQ LADRSFNNIA DVGRAAPSVT LRLASSGYGK STQAYIRGIG QTDFNFALEP
121 AVGFYVDDVY HASLFGTSFD LLDLERIEIL RGPQGTLFGK NSIGGAVRLI SQKPRDRFEA
181 SIEGTYGSYD RIDLRGMVNI PLVAEQLALR LSFASKERDG YVDRVDFACA YPELAGNLTP
241 TVSQHGNSCK LGTLGGESVR AGRAALRWTP SSDIEVNLAA EIIRDNSEGA ADSLIYINTA
301 ATALVNHNNN RLIPAYGIPY DGRFIVDPYV SFASYDSKFL GREVPAVNTV HSESYSGDIA
361 WNITENVQFK SITAYQKFNG RFTQNANNAP LPVALTDNIA GFEQFTQEFR VVGTSFNDML
421 DWAAGVFYFE GDSSLGGGAY LAASNIGFDQ NDSTHAKNRS AFAHGTLHLT EQFSLTAGLR
481 YTKESKSYRF DRVNVPAGTP FFAGGAFTSP EAEMDRVDYK IGLDYQLTDR VMVYGQFSTG
541 FKGGGINPRP FTPAAAVPFG PETLNAYEIG LKSDLFDRLV RLNLAAYHSD YSNLQLSANG
601 FDNNGAPSIV IANAGSARIN GVEAEMEIRP ARGLQIDMSA SYTDFKIKDL GAAAGVSGGP
661 TLDSKAPGVP EWKYNAGIQY RAELGNGGSL TPRFDVYYQS RLFNEWTNNP RAAEDGYALA
721 NARLTYNAPD EEWYAALSVT NLFDQFYYVN RFIQSGTYIF TGQPSRPREW AVTVGRRF
//